View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_28 (Length: 237)
Name: NF1914_low_28
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 910434 - 910227
Alignment:
| Q |
10 |
tagttgattgaaagtaagaaaagcaacctgccaaacatatgcttttccattactagaaccacaaacgatgttagatgcatcggggctaatcgcagcctgg |
109 |
Q |
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| T |
910434 |
tagttgattgaaagtaagaaaagcaacctgccaaacatatgcttttccattactagaaccacaaacgatgttagatgcatcggggctaatcgcagcctgg |
910335 |
T |
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| Q |
110 |
aattgaacacatgagacagggaaaaagtcaggagtcgtgaaagaaacttgatgcaagaaattctgtgctacaggctaaattctcaccttaataaaaaatg |
209 |
Q |
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| T |
910334 |
aattgaacacatgagacagggaaaaagtcaggagtcatgaaagaaacttgatgcaagaaattctgagctacaggccaaattctcaccttaataaaaaatg |
910235 |
T |
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| Q |
210 |
attcaata |
217 |
Q |
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|||||||| |
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| T |
910234 |
attcaata |
910227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 661520 - 661721
Alignment:
| Q |
14 |
tgattgaaagtaagaaaagcaacctgccaaacatatgcttttccattactagaaccacaaacgatgttagatgcatcggggctaatcgcagcctggaatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
661520 |
tgattgaaagtaagaaaagcaacctgccaaacatatgcttttgcattactagaaccacaaacgatgttagatgcatcggggctaatcgcagcctggaatt |
661619 |
T |
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| Q |
114 |
gaacacatgagacagggaaaaagtcaggagtcgtgaaagaaacttgatgcaagaaattctgtgctacaggctaaattctcaccttaataaaaaatgattc |
213 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
661620 |
gaacac--gagacagggaaaaagtcaggagtcatgaaagaaacttgatgcaagaaattctgatgtacaggccaaattctcaccttaataaaaaatgattc |
661717 |
T |
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| Q |
214 |
aata |
217 |
Q |
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|||| |
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| T |
661718 |
aata |
661721 |
T |
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