View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1914_low_29 (Length: 236)

Name: NF1914_low_29
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1914_low_29
NF1914_low_29
[»] chr8 (20 HSPs)
chr8 (3-217)||(21247505-21247719)
chr8 (3-217)||(27679740-27679954)
chr8 (1-217)||(37209538-37209755)
chr8 (12-211)||(26196734-26196933)
chr8 (3-217)||(30714331-30714550)
chr8 (3-217)||(30722108-30722327)
chr8 (3-209)||(41048687-41048893)
chr8 (3-185)||(23429360-23429544)
chr8 (15-184)||(17909586-17909756)
chr8 (1-184)||(10738794-10738978)
chr8 (109-187)||(12756309-12756387)
chr8 (3-98)||(8509610-8509705)
chr8 (172-217)||(37204233-37204278)
chr8 (174-217)||(21241172-21241215)
chr8 (174-217)||(27683522-27683565)
chr8 (174-217)||(30727716-30727759)
chr8 (14-101)||(15305179-15305262)
chr8 (14-101)||(15485548-15485631)
chr8 (130-179)||(16845855-16845904)
chr8 (174-211)||(26197052-26197089)
[»] chr4 (43 HSPs)
chr4 (3-217)||(12435462-12435676)
chr4 (3-217)||(42410936-42411150)
chr4 (3-217)||(910962-911176)
chr4 (3-217)||(29333469-29333680)
chr4 (15-217)||(30673815-30674021)
chr4 (3-217)||(1874108-1874326)
chr4 (3-217)||(23200351-23200569)
chr4 (3-211)||(12429005-12429210)
chr4 (3-217)||(16325834-16326048)
chr4 (15-217)||(12659307-12659508)
chr4 (3-209)||(20192717-20192923)
chr4 (3-187)||(6162077-6162260)
chr4 (1-218)||(4393868-4394088)
chr4 (3-192)||(13999824-14000015)
chr4 (3-185)||(22748713-22748895)
chr4 (3-182)||(13753520-13753698)
chr4 (8-179)||(26996988-26997159)
chr4 (3-97)||(53981923-53982018)
chr4 (3-184)||(12746722-12746903)
chr4 (142-217)||(25687674-25687749)
chr4 (126-221)||(42119848-42119943)
chr4 (1-97)||(2924150-2924247)
chr4 (3-101)||(25691425-25691527)
chr4 (124-179)||(54678741-54678795)
chr4 (174-217)||(917404-917447)
chr4 (174-217)||(42404643-42404686)
chr4 (126-185)||(53529644-53529703)
chr4 (29-179)||(20275721-20275871)
chr4 (172-217)||(18890000-18890045)
chr4 (125-185)||(6407885-6407945)
chr4 (173-217)||(23187962-23188006)
chr4 (174-217)||(1913849-1913892)
chr4 (174-217)||(16334878-16334921)
chr4 (174-217)||(30679908-30679951)
chr4 (142-209)||(53982062-53982129)
chr4 (1-58)||(24858126-24858183)
chr4 (3-90)||(53529521-53529609)
chr4 (115-158)||(2924080-2924123)
chr4 (174-217)||(55325479-55325522)
chr4 (176-217)||(25697442-25697483)
chr4 (13-50)||(42120024-42120061)
chr4 (131-179)||(19581992-19582040)
chr4 (125-185)||(24858007-24858066)
[»] chr6 (10 HSPs)
chr6 (3-217)||(23427311-23427525)
chr6 (6-185)||(19816721-19816895)
chr6 (30-209)||(14855791-14855971)
chr6 (13-184)||(17270338-17270510)
chr6 (126-187)||(19441313-19441374)
chr6 (126-209)||(6932991-6933074)
chr6 (15-185)||(25397756-25397924)
chr6 (174-217)||(18738573-18738616)
chr6 (174-217)||(23421636-23421679)
chr6 (174-211)||(33661015-33661052)
[»] chr1 (30 HSPs)
chr1 (3-217)||(38990929-38991142)
chr1 (4-217)||(28519104-28519318)
chr1 (3-217)||(31093063-31093281)
chr1 (3-217)||(18535095-18535313)
chr1 (3-187)||(27179117-27179301)
chr1 (3-217)||(37356849-37357063)
chr1 (3-217)||(11660003-11660220)
chr1 (3-209)||(15716452-15716658)
chr1 (3-209)||(33493062-33493267)
chr1 (1-187)||(29547566-29547753)
chr1 (1-179)||(40274590-40274767)
chr1 (3-185)||(145538-145721)
chr1 (13-187)||(17721555-17721730)
chr1 (26-184)||(11441842-11441999)
chr1 (115-194)||(16168703-16168782)
chr1 (3-185)||(15552692-15552874)
chr1 (13-184)||(26028525-26028699)
chr1 (13-185)||(22576022-22576194)
chr1 (174-217)||(38984912-38984955)
chr1 (3-185)||(27317438-27317612)
chr1 (171-217)||(37365267-37365313)
chr1 (125-177)||(27417607-27417658)
chr1 (174-217)||(18540821-18540864)
chr1 (174-217)||(27347283-27347326)
chr1 (174-217)||(31099669-31099712)
chr1 (174-217)||(35625368-35625411)
chr1 (174-217)||(11654020-11654063)
chr1 (3-53)||(16168591-16168641)
chr1 (172-217)||(28512810-28512853)
chr1 (174-211)||(39492740-39492777)
[»] chr5 (29 HSPs)
chr5 (1-217)||(25365510-25365726)
chr5 (1-161)||(25365839-25365999)
chr5 (3-217)||(35264656-35264874)
chr5 (3-217)||(23053495-23053712)
chr5 (3-209)||(28367106-28367312)
chr5 (3-217)||(21171303-21171520)
chr5 (3-209)||(30957722-30957928)
chr5 (72-217)||(16675462-16675607)
chr5 (3-185)||(18080100-18080285)
chr5 (3-187)||(24213462-24213647)
chr5 (13-184)||(17945586-17945758)
chr5 (3-101)||(19780247-19780346)
chr5 (130-187)||(34648077-34648134)
chr5 (3-57)||(16673334-16673388)
chr5 (127-179)||(19780183-19780234)
chr5 (3-58)||(22231101-22231156)
chr5 (15-184)||(19699182-19699353)
chr5 (115-179)||(19479672-19479735)
chr5 (174-217)||(23059070-23059113)
chr5 (174-217)||(35270397-35270440)
chr5 (127-184)||(21575096-21575152)
chr5 (174-217)||(39654043-39654086)
chr5 (126-184)||(12026447-12026505)
chr5 (14-52)||(24111170-24111208)
chr5 (12-54)||(36205732-36205774)
chr5 (68-101)||(17604567-17604600)
chr5 (172-217)||(21178166-21178211)
chr5 (124-184)||(29948594-29948653)
chr5 (123-179)||(35104964-35105019)
[»] chr7 (29 HSPs)
chr7 (1-217)||(29185352-29185566)
chr7 (1-221)||(25830500-25830719)
chr7 (3-217)||(8247935-8248153)
chr7 (3-201)||(558005-558203)
chr7 (3-217)||(340409-340627)
chr7 (3-209)||(25498883-25499088)
chr7 (3-187)||(32148305-32148489)
chr7 (3-209)||(16648251-16648457)
chr7 (3-209)||(17622612-17622818)
chr7 (13-209)||(42208731-42208927)
chr7 (3-209)||(42162380-42162586)
chr7 (3-185)||(20125095-20125277)
chr7 (15-101)||(22477226-22477313)
chr7 (172-217)||(22822535-22822580)
chr7 (174-217)||(22826840-22826883)
chr7 (8-187)||(26456994-26457173)
chr7 (174-217)||(29176544-29176587)
chr7 (125-179)||(20362601-20362655)
chr7 (115-185)||(34326237-34326307)
chr7 (13-101)||(5998160-5998249)
chr7 (126-187)||(23818864-23818925)
chr7 (126-184)||(7578472-7578528)
chr7 (174-217)||(8242541-8242584)
chr7 (174-219)||(2068837-2068882)
chr7 (116-169)||(14997607-14997660)
chr7 (26-97)||(34326146-34326218)
chr7 (174-217)||(346643-346686)
chr7 (68-184)||(14719509-14719624)
chr7 (1-57)||(14997712-14997768)
[»] chr3 (38 HSPs)
chr3 (1-217)||(2978351-2978567)
chr3 (3-217)||(49486840-49487058)
chr3 (3-209)||(9724748-9724955)
chr3 (3-217)||(21883249-21883467)
chr3 (3-209)||(13990660-13990866)
chr3 (3-209)||(23344204-23344410)
chr3 (3-209)||(40800763-40800969)
chr3 (13-217)||(15752615-15752819)
chr3 (3-209)||(2168776-2168982)
chr3 (3-209)||(3110634-3110839)
chr3 (3-206)||(13980784-13980987)
chr3 (1-185)||(17032948-17033132)
chr3 (118-209)||(21477436-21477527)
chr3 (13-184)||(44122179-44122350)
chr3 (14-179)||(15636446-15636611)
chr3 (13-185)||(12990766-12990940)
chr3 (68-179)||(39875617-39875726)
chr3 (126-179)||(3170301-3170354)
chr3 (129-221)||(29225242-29225334)
chr3 (126-184)||(20458942-20458999)
chr3 (171-217)||(21458331-21458377)
chr3 (172-217)||(21453158-21453203)
chr3 (173-217)||(15758408-15758452)
chr3 (174-217)||(2982295-2982338)
chr3 (126-189)||(7870266-7870329)
chr3 (174-217)||(21473104-21473147)
chr3 (174-217)||(21877164-21877207)
chr3 (174-217)||(49491337-49491380)
chr3 (13-58)||(27387677-27387722)
chr3 (8-184)||(27547039-27547217)
chr3 (1-57)||(20454446-20454502)
chr3 (13-57)||(27351066-27351110)
chr3 (134-169)||(10937252-10937287)
chr3 (13-60)||(19478366-19478413)
chr3 (43-96)||(25468501-25468554)
chr3 (123-168)||(25468577-25468622)
chr3 (13-57)||(19482110-19482154)
chr3 (12-57)||(26176103-26176150)
[»] scaffold0014 (1 HSPs)
scaffold0014 (3-217)||(111700-111918)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-217)||(13848-14068)
[»] chr2 (28 HSPs)
chr2 (3-217)||(19437653-19437870)
chr2 (3-209)||(22430176-22430382)
chr2 (3-209)||(22435770-22435976)
chr2 (3-209)||(43776820-43777025)
chr2 (3-187)||(636110-636294)
chr2 (3-187)||(7910110-7910294)
chr2 (3-187)||(14898611-14898795)
chr2 (3-221)||(25445171-25445392)
chr2 (15-217)||(24053404-24053606)
chr2 (3-217)||(43287509-43287723)
chr2 (14-194)||(17319655-17319835)
chr2 (1-192)||(16443470-16443664)
chr2 (3-187)||(25231811-25231996)
chr2 (126-187)||(5836224-5836285)
chr2 (15-184)||(7385002-7385174)
chr2 (3-184)||(19912092-19912272)
chr2 (13-184)||(19089301-19089472)
chr2 (127-187)||(1525594-1525654)
chr2 (8-184)||(11311882-11312058)
chr2 (3-97)||(21289782-21289877)
chr2 (174-217)||(19443228-19443271)
chr2 (117-184)||(34111139-34111205)
chr2 (123-168)||(19933265-19933310)
chr2 (172-217)||(24056739-24056784)
chr2 (174-217)||(25454833-25454876)
chr2 (174-221)||(31433045-31433092)
chr2 (174-217)||(43293254-43293297)
chr2 (130-184)||(26538914-26538968)
[»] scaffold0004 (1 HSPs)
scaffold0004 (3-209)||(345796-346002)
[»] scaffold0124 (1 HSPs)
scaffold0124 (3-187)||(39271-39454)
[»] scaffold0066 (1 HSPs)
scaffold0066 (13-187)||(11432-11607)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-57)||(159677-159733)
[»] scaffold0062 (4 HSPs)
scaffold0062 (126-184)||(19763-19820)
scaffold0062 (126-184)||(29931-29988)
scaffold0062 (13-57)||(19692-19736)
scaffold0062 (13-57)||(29860-29904)
[»] scaffold0079 (1 HSPs)
scaffold0079 (174-217)||(57939-57982)
[»] scaffold0081 (1 HSPs)
scaffold0081 (125-169)||(7715-7759)
[»] scaffold0591 (1 HSPs)
scaffold0591 (174-213)||(9323-9362)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-54)||(67677-67729)
[»] scaffold0043 (1 HSPs)
scaffold0043 (13-57)||(50576-50620)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 21247505 - 21247719
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  21247505 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 21247604  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21247605 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 21247704  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  21247705 atagcaaatgtgtta 21247719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 27679954 - 27679740
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  27679954 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 27679855  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27679854 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 27679755  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  27679754 atagcaaatgtgtta 27679740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 37209538 - 37209755
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37209538 ttccttcaccaaggttttatcccattgggtttttctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 37209637  T
Q  101 annnnnnn-cccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtc 199  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37209638 attttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtc 37209737  T
Q  200 taaatagcaaatgtgtta 217  Q
     |||||||||||||||||    
T  37209738 caaatagcaaatgtgtta 37209755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 26196734 - 26196933
Alignment:
Q  12 aggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||         |||    
T  26196734 aggttttatcccattggattttcctgataagatttttaacgaggcagttcacactcaaaaggatatagtactctttttccttcactagtttttttccccc 26196833  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaat 211  Q
    || || ||||||||||||||||| |||||||| ||||||||| |||||||| |||||||| |||||||||||||||||| |||||||  |||||||||||    
T  26196834 actggtttttattttagtaaggtcttaatgagacatatcctcaatggacattcaagggggggtgttataaatattaatagtggatgttcaaatagcaaat 26196933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 30714550 - 30714331
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  30714550 ccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 30714451  T
Q  99 gaannnnnnncccacggggttttattt-tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatg 197  Q
    |||       || |   |||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  30714450 gaatttttctcctattaggttttctctatagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatg 30714351  T
Q  198 tctaaatagcaaatgtgtta 217  Q
    || ||||||||| |||||||    
T  30714350 tccaaatagcaattgtgtta 30714331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 30722327 - 30722108
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  30722327 ccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 30722228  T
Q  99 gaannnnnnncccacggggttttattt-tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatg 197  Q
    |||       || |   |||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  30722227 gaatttttctcctattaggttttctctatagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatg 30722128  T
Q  198 tctaaatagcaaatgtgtta 217  Q
    || ||||||||| |||||||    
T  30722127 tccaaatagcaattgtgtta 30722108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 41048687 - 41048893
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||  ||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  41048687 ccttaaccatggttttatcccattgggttttcctggaaaggtttttaataaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 41048786  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||| ||||||||||  ||||| ||||||||||| |||||||| |||||||  | |||||||| |    
T  41048787 tttttttcccactgggtttttctctagtaaggttttaat-aggcatatccgagatgggcatccaaggggaagtgttatgaatattacaagtggatgtcca 41048885  T
Q  202 aatagcaa 209  Q
     |||||||    
T  41048886 tatagcaa 41048893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 23429360 - 23429544
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| || ||||||||| ||||||||||||||||||||||||| |||||| |||   || |||||| || |||||||||||||||||||||  ||    
T  23429360 ccttaaccatggatttatcccactgggttttcctggtaaggtttttaatgaggcagattatgacacaaaagaatgttgtactctttttccttcactgtaa 23429459  T
Q  102 nnnnnnn-cccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
            ||||  |||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  23429460 ttttttttcccattgggttttactctagtaaggttttaatgagggatatccttgatggacatccaagggggagtgttatgaatat 23429544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 17909586 - 17909756
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnncccac 113  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| | || ||||||| | |||| ||||||||||||||||||||         ||     
T  17909586 ttttatcccattgggtttccctggtaaggtttttaacgaggcagattaagacacaaaaggttgttgtgctctttttccttcactagaatttttttttcat 17909685  T
Q  114 ggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
     |||||||  | ||||||||||||||||||||| |||||  |||||||||||||| |||||||||| ||||    
T  17909686 tgggtttttctctagtaaggttttaatgaggcacatccttcatggacatccaaggaggagtgttatgaata 17909756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10738794 - 10738978
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||||| |||| |||||||||||| ||| |||||| |||||| ||||||| |||||| ||| |||| ||||||| | ||||||||||||||||||||||     
T  10738794 ttccttaaccatggttttatcccactgg-ttttcccggtaagatttttaatgaggcagattaaaacacaaaaggttgttgtactctttttccttcactat 10738892  T
Q  100 a-annnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    | |        |||  |||||||  | || |||||||||||||||||| |||||  |||||||| |||||||||||||||| ||||    
T  10738893 atattttttttccattgggtttttctctaataaggttttaatgaggcacatccttcatggacattcaagggggagtgttatgaata 10738978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 12756387 - 12756309
Alignment:
Q  109 cccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    ||||| |||||||  | |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||    
T  12756387 cccactgggtttttctctagtaaggttttaatgagacatatccgagatggacatccaagggggagtgttatgaatatta 12756309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 8509610 - 8509705
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcacta 98  Q
    |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||| | |   |  ||||||| ||||||||||||||||| ||||    
T  8509610 ccttaaccatggttttatcccattggattttcttggtaaggtttttaacgaggcaaattatgatacaaaggatgttgtactctttttcctttacta 8509705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 37204233 - 37204278
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  37204233 agtgttataaatattaatattggatgtccaaatagcaaatgtgtta 37204278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 21241172 - 21241215
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  21241172 tgttataaatattaatattggatgtccaaatagcaaatgtgtta 21241215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 27683565 - 27683522
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  27683565 tgttataaatattaatattggatgtccaaatagcaaatgtgtta 27683522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 30727759 - 30727716
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  30727759 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 30727716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 15305262 - 15305179
Alignment:
Q  14 gttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    ||||||||| || | ||||| |||||  |||||||  ||||||||||||  ||||||||||| ||||||||||||  |||||||||||    
T  15305262 gttttatcctatcgagttttgctggt--ggtttttcgcgaggcaattcatgctcaaaaggatgttgtactctttt--cttcactagaa 15305179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 15485631 - 15485548
Alignment:
Q  14 gttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    ||||||||| || | ||||| |||||  |||||||  ||||||||||||  ||||||||||| ||||||||||||  |||||||||||    
T  15485631 gttttatcctatcgagttttgctggt--ggtttttcgcgaggcaattcatgctcaaaaggatgttgtactctttt--cttcactagaa 15485548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 16845904 - 16845855
Alignment:
Q  130 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    |||||||||||||| |||||| | |||||||||||||||  |||||||||    
T  16845904 aaggttttaatgagacatatctttgatggacatccaaggaagagtgttat 16845855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 26197089 - 26197052
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaat 211  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  26197089 tgttataaatattaatagtggatgtccaaatagcaaat 26197052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 12435676 - 12435462
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  12435676 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 12435577  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12435576 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 12435477  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  12435476 atagcaaatgtgtta 12435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 42410936 - 42411150
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  42410936 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 42411035  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42411036 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 42411135  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  42411136 atagcaaatgtgtta 42411150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 911176 - 910962
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  911176 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 911077  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||    
T  911076 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagaggaagtgttataaatattaatattggatgtccaa 910977  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  910976 atagcaaatgtgtta 910962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 29333469 - 29333680
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||      
T  29333469 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaa---tattgtactctttttccttcactagatt 29333565  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29333566 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 29333665  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  29333666 atagcaaatgtgtta 29333680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 30674021 - 30673815
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggcaatt---caaactcaaaagg-atattgtactctttttccttcactagaannnnnnncc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |   || || ||||||| ||||||||||||||||||||||||||||       ||    
T  30674021 ttttgtcccattgggttttcctggtaaggtttttaacgaggcaaattatcatacacaaaagggatattgtactctttttccttcactagaatttttctcc 30673922  T
Q  111 cacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaa 210  Q
     |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  30673921 tattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaa 30673822  T
Q  211 tgtgtta 217  Q
    |||||||    
T  30673821 tgtgtta 30673815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 1874326 - 1874108
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaa-ggatattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||| |||||||||||||||||||||||||||    
T  1874326 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaaaggatattgtactctttttccttcacta 1874227  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  1874226 gaatttttctcctattaggtttttctctagtaaggttttaacgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 1874127  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  1874126 ccaaatagcaaatgtgtta 1874108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 23200351 - 23200569
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  23200351 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 23200450  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  23200451 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatctaagggggagtgttataaatattaatagtggatgt 23200550  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  23200551 ccaaatagcaaatgtgtta 23200569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 12429210 - 12429005
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    |||||||  ||| |||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||| ||||||||||       
T  12429210 ccttcacatagggtttatcccattgagttttcctggtaaggtttttaacgaggaagttcacactcaaaaggatatagtactctttt-ccttcactag--- 12429115  T
Q  103 nnnnnncccacggggtttt-attttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           |||| ||||||| |||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |    
T  12429114 tttttttccactgggtttttattttagtaaagtcttaatgaggcatatcctcaatggacatccaaggaggagtgttataaatattaatagtggatgtcca 12429015  T
Q  202 aatagcaaat 211  Q
    || |||||||    
T  12429014 aagagcaaat 12429005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 16326048 - 16325834
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||| |||| |||||| | |||||||||||||||||||||||||||||||||||| |||  || || |||   |||||||||||||||| ||||||||||    
T  16326048 ccttaaccatggttttgttccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaa---gatattgtactcttttaccttcactag 16325952  T
Q  100 aannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtc 199  Q
    ||       || |   ||||||  | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||    
T  16325951 aatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtc 16325852  T
Q  200 taaatagcaaatgtgtta 217  Q
     |||||||||||||||||    
T  16325851 caaatagcaaatgtgtta 16325834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 12659508 - 12659307
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||  || || |||   |||||||||||||||||||||||||||||       ||     
T  12659508 ttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaa---gatattgtactctttttccttcactagaattttct-cct 12659413  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaat 211  Q
    |   ||||||  | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12659412 attaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaat 12659313  T
Q  212 gtgtta 217  Q
    ||||||    
T  12659312 gtgtta 12659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 20192923 - 20192717
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||| ||| ||||||||||||||||||||| |||    
T  20192923 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaatgatgttgtactctttttccttcact-gaa 20192825  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||  | |||||||| |    
T  20192824 attttttcccactgggtttttctctagtaaggttttaatgaggcatatccgatatggacatccaagggggagtgttatgaatattacaagtggatgtcca 20192725  T
Q  202 aatagcaa 209  Q
     |||||||    
T  20192724 tatagcaa 20192717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 6162077 - 6162260
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  6162077 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 6162176  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
            |||| |||||||  | ||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  6162177 tttttt--ccactgggtttttctctagtaaggtgttaatgaggcatatccgagatggacatccaagggggagtgttatgaatatta 6162260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4394088 - 4393868
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca---attcaaactcaaaag-gatattgtactctttttccttcac 96  Q
    |||||| |||| ||||||||| |||| ||||||    ||||||||||||||||||||   ||||| || |||||| ||||||||||| ||||||||||||    
T  4394088 ttccttaaccatggttttatcacattaggttttaaatgtaaggtttttaacgaggcagatattcacacacaaaagcgatattgtactatttttccttcac 4393989  T
Q  97 tagaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggat 196  Q
    ||||        || || | | |||  | ||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  4393988 tagatattttttcc-actgagattttctctagtaaggttttattgaggtatatcctcgatggacatccaatggagagtgttataaatattaatagtggat 4393890  T
Q  197 gtctaaatagcaaatgtgttaa 218  Q
    ||||||||| |||||| |||||    
T  4393889 gtctaaataacaaatgggttaa 4393868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 13999824 - 14000015
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||| |||||||| ||||||||||| || |||  ||| ||||||||| |||||||||||||||||||||||||    
T  13999824 ccttaaccatggttttatcccattgggtttttctggtaagatttttaacgagacagattataacacaaaaggatgttgtactctttttccttcactagaa 13999923  T
Q  102 nnnnnnncccacggggttttattttagt-aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 192  Q
            | ||  ||||||  | || | |||||||||||||||||||||||  || |||||||||||||||||||||| |||| |||||||    
T  13999924 ttttttttcgaccaggtttttctctactaaaggttttaatgaggcatatccttcatagacatccaagggggagtgttatgaataataatatt 14000015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 22748713 - 22748895
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggc-aattcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||| ||||| |||| | || ||||||| | |||||||||||||||||||||||||    
T  22748713 ccttaaccatggttttatcccactgggttttcctggtaaggtttttaatgaggcaaattaagacacaaaaggttgttgtactctttttccttcactagaa 22748812  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
            |||  | |||||  | |||||||||||||||||||||||| || ||||||||| ||||||| |||||||| |||||    
T  22748813 ttttttt-ccattgagtttttctctagtaaggttttaatgaggcatattcttgatggacattcaaggggaagtgttatgaatat 22748895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 13753698 - 13753520
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaa--ggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    |||||| || ||||||||| ||||| |||||||||||||  ||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||||||    
T  13753698 ccttcatcatggttttatctcattgagttttcctggtaaagggtttttaacgaggcaatt-acactcaaaagaatattgcactctttttccttcactaga 13753600  T
Q  101 annnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaa 182  Q
    |        |||   |||| | ||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  13753599 attttttt-ccattaggttat-ttttagtaatgttttattgaggcatatccttgatggacatccaaaggggagtgttataaa 13753520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 26996988 - 26997159
Alignment:
Q  8 accaaggttttatcccattgggttttcctggtaaggtttttaacgaggc-aattcaaactcaaaaggatattgtactctttttccttcactagaannnnn 106  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||   || ||||||||| |||||||||||||||||| ||||||         
T  26996988 accatggttttattccattgggttttcctggtaaggtttttaacgaggcaaattatgacacaaaaggatgttgtactctttttccttcgctagaattttt 26997087  T
Q  107 nncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
       |||  || ||||  | | |||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  26997088 tttccattggatttttctcttgtaaggttttaacgagacatatcct-gatggacatccaagggggagtgttat 26997159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 53981923 - 53982018
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcact 97  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| |||||||||||||||||||||    
T  53981923 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcact 53982018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 12746903 - 12746722
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||| |||||||| |||||||||||||||| |||||| |||   || ||||| ||| |||||||||||||| ||||||| ||    
T  12746903 ccttaaccatggttttatcccactgggtttttctggtaaggtttttaatgaggcagattatgacacaaaatgatgttgtactctttttcattcactataa 12746804  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
            |||  ||||||| || |||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||    
T  12746803 ttttttttccattgggtttttttatagtaaggttttaatgaggcgtatcct-gatggacattcaagggggagtgttatgaata 12746722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 25687749 - 25687674
Alignment:
Q  142 aggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  25687749 aggcatatcctcaatgaacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 25687674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 42119943 - 42119848
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaatgtgttaatgg 221  Q
    ||||||| |||||||||||||||||||| |||  | |||||||| || ||||||||||||||||| |||||||| ||||||||||||  |||||||    
T  42119943 tagtaagattttaatgaggcatatcctcaatgagcttccaagggagaatgttataaatattaatagtggatgtccaaatagcaaatggattaatgg 42119848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 2924247 - 2924150
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcact 97  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||||||| |||||| |||   || ||||||||| |||||||||||||||||||||    
T  2924247 ttccttaaccatagttttatcccactgggttttcctggtaaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcact 2924150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 25691527 - 25691425
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-at--tcaaactcaaaa-ggatattgtactctttttccttcacta 98  Q
    |||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||  ||| || ||||| ||||||||||| |||||||||||||||    
T  25691527 ccttaaccaaggttttgtcccattgtgttttcctagtaaggtttttaacgaggcagattatcatacacaaaagggatattgtacgctttttccttcacta 25691428  T
Q  99 gaa 101  Q
    |||    
T  25691427 gaa 25691425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 54678795 - 54678741
Alignment:
Q  124 tttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  54678795 tttagtaaggttttaatgaggcatatcctc-atagacatccaagggggagtgttat 54678741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 917447 - 917404
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  917447 tgttataaatattaatattggatgtctaaatagcaaatatgtta 917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 42404643 - 42404686
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  42404643 tgttataaatattaatattggatgtccaaatagcaaatgtgtta 42404686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 53529644 - 53529703
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    |||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| |||||    
T  53529644 tagtaaggttttaacgaggcatatccttgatggacattcaatggggagtgttatgaatat 53529703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 20275721 - 20275871
Alignment:
Q  29 gttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnncccacggggttttatttta 127  Q
    |||||||||||||||||||||| ||| || |||   || ||||||||| ||||||||||||| |||||||||||         ||  || ||||  | ||    
T  20275721 gttttcctggtaaggtttttaatgagacagattatgacacaaaaggatgttgtactcttttttcttcactagaatttttttttcattggatttttctcta 20275820  T
Q  128 gtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    |||||||||||| ||| |||||| | ||||||||||||||||||||||||||    
T  20275821 gtaaggttttaacgagacatatcat-gatggacatccaagggggagtgttat 20275871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 18890000 - 18890045
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  18890000 agtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 18890045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 6407885 - 6407945
Alignment:
Q  125 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    |||||| ||||||||||| | |||||||||||||||||| |||||||||| |||| |||||    
T  6407885 ttagtatggttttaatgatgtatatcctcgatggacatctaagggggagttttatgaatat 6407945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 23187962 - 23188006
Alignment:
Q  173 gtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  23187962 gtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 23188006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 1913892 - 1913849
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  1913892 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 1913849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 16334921 - 16334878
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  16334921 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 16334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 30679951 - 30679908
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  30679951 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 30679908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 53982062 - 53982129
Alignment:
Q  142 aggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaa 209  Q
    ||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| | |||||||    
T  53982062 aggcatatccaagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 53982129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24858183 - 24858126
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaa 58  Q
    ||||||||||| |||||| ||||| || ||||| |||||||| |||||||||||||||    
T  24858183 ttccttcaccatggttttctcccactgagtttttctggtaagatttttaacgaggcaa 24858126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 53529521 - 53529609
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttc 90  Q
    |||| ||||| |||||||| || || |||||| |||||||||||||||||||||| |||   || ||||| ||| ||||||||||||||    
T  53529521 ccttaaccaaagttttatctcactgagttttcttggtaaggtttttaacgaggcagattatgacacaaaaagatgttgtactctttttc 53529609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 2924123 - 2924080
Alignment:
Q  115 gggttttattttagtaaggttttaatgaggcatatcctcgatgg 158  Q
    |||||||| | ||||||||||||||||||||||||||| |||||    
T  2924123 gggttttactctagtaaggttttaatgaggcatatccttgatgg 2924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 55325479 - 55325522
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| | |||||| |||||||||||||||||    
T  55325479 tgttataaatattaataatagatgtccaaatagcaaatgtgtta 55325522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 25697483 - 25697442
Alignment:
Q  176 ttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  25697483 ttataaatattaatagtggatatccaaatagcaaatgtgtta 25697442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 42120061 - 42120024
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaa 50  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  42120061 ggttttatcccattgagttttcctagtaaggtttttaa 42120024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 19581992 - 19582040
Alignment:
Q  131 aggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    ||||||||||||| |||||| | |||||||||| |||| ||||||||||    
T  19581992 aggttttaatgagacatatctttgatggacatctaaggaggagtgttat 19582040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 24858066 - 24858007
Alignment:
Q  125 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    |||||||||||||||| ||||||||  ||||||||||| ||||||  |||||||| |||||    
T  24858066 ttagtaaggttttaattaggcatattgtcgatggacat-caagggaaagtgttatgaatat 24858007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 23427311 - 23427525
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  23427311 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 23427410  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  23427411 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatttgatgtccaa 23427510  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  23427511 atagcaaatgtgtta 23427525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 19816895 - 19816721
Alignment:
Q  6 tcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaannnn 105  Q
    |||||| |||||||||||||||| |||||    ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||||        
T  19816895 tcaccatggttttatcccattggattttc----taaggtttttaacgaggcagttcacactcacaaggatattgtactctttttccttaactagaatttt 19816800  T
Q  106 nnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
         ||| || |||| |||||||||||||||||| ||||||||||||  ||||||||||| ||| ||||||||||||||    
T  19816799 ttt-tcactggctttttttttagtaaggttttaataaggcatatcctcagtggacatccaaagggtagtgttataaatat 19816721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 14855791 - 14855971
Alignment:
Q  30 ttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnncccacggggttttattttag 128  Q
    |||||||||||||||||||||||||| | |||  ||| ||||||||| ||||||||||||||||||| |  ||       ||||| |||||||  | |||    
T  14855791 ttttcctggtaaggtttttaacgaggtagattataacacaaaaggatgttgtactctttttccttcattgaaatttttttcccactgggtttttctctag 14855890  T
Q  129 taaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaa 209  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| | |||||||    
T  14855891 taaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 14855971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 17270510 - 17270338
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||||||||||||  |||||||||||||||||||||||||| ||| |||   || ||||||||| || |||||||||||||||| ||||        |||    
T  17270510 ggttttatcccataaggttttcctggtaaggtttttaacgaagcagattatgacacaaaaggatgttttactctttttccttcattagattttttttccc 17270411  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |  | |||||  | |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  17270410 atcgcgtttttctctagtaaggttttaatgaggcatatccttcatggacatccaagggggagtgttatgaata 17270338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 19441374 - 19441313
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  19441374 tagtaaggttttaatgaggcatatcatcaatggacatccaagggggagtgttatgaatatta 19441313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 6932991 - 6933074
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaa 209  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |  ||||||| |||||||  | |||||||| | |||||||    
T  6932991 tagtaaggttttaatgaggcatatcttcgacggacatccaaggagctgtgttatgaatattataagtggatgtccatatagcaa 6933074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 25397756 - 25397924
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnncccac 113  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| |||   || ||||| ||| ||||| ||||||||||||||||| |        |||     
T  25397756 ttttatcccactggattttcctggtaaggtttttaatgaggcagattatgacacaaaatgatgttgtaatctttttccttcactag-attttttttccat 25397854  T
Q  114 ggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
     || ||||    ||||||||||||||||||||||||||| ||||||||| |  ||||||||||||| |||||    
T  25397855 tggatttttcactagtaaggttttaatgaggcatatccttgatggacattc--gggggagtgttatgaatat 25397924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 18738573 - 18738616
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  18738573 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 18738616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 23421636 - 23421679
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  23421636 tgttataaatattaatatttgatgtccaaatagcaaatgtgtta 23421679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 33661052 - 33661015
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaat 211  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  33661052 tgttataaatattaatagtggatgtccaaatagcaaat 33661015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 38990929 - 38991142
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  38990929 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagatt 38991028  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38991029 ttttttcccacggggttttattttagtaa-gttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 38991127  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  38991128 atagcaaatgtgtta 38991142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 28519104 - 28519318
Alignment:
Q  4 cttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaann 103  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       
T  28519104 cttcaccaaggttttatcccattgggttttcctggtaagatttttaacgaggaaattcaaactcaaaaggatattgtactctttttccttcactagattt 28519203  T
Q  104 nnnnn-cccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaa 202  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28519204 ttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaa 28519303  T
Q  203 atagcaaatgtgtta 217  Q
    |||||||||||||||    
T  28519304 atagcaaatgtgtta 28519318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 31093281 - 31093063
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  31093281 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 31093182  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31093181 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 31093082  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  31093081 ccaaatagcaaatgtgtta 31093063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 18535313 - 18535095
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||| ||||||||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  18535313 ccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 18535214  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  |  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  18535213 gaatttttctcctattaggtttttctccagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 18535114  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  18535113 ccaaatagcaaatgtgtta 18535095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 27179301 - 27179117
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  27179301 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 27179202  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  27179201 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatatta 27179117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 37357063 - 37356849
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || |||   ||||||||||||||||||||||||||     
T  37357063 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaa---gatattgtactctttttccttcactaa 37356967  T
Q  100 aannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtc 199  Q
    ||       || |   ||||||  | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||    
T  37356966 aatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtc 37356867  T
Q  200 taaatagcaaatgtgtta 217  Q
     |||||||||||||||||    
T  37356866 caaatagcaaatgtgtta 37356849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 11660003 - 11660220
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||| ||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  11660003 ccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 11660102  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   |||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  11660103 gaatttttctcctattaggttttctct-agtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 11660201  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | || || |||||||||||    
T  11660202 ccaagtaacaaatgtgtta 11660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 15716452 - 15716658
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  15716452 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 15716551  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| | |||||  | ||||||||||||||||||||||||||  |||| ||||||||||||||||||||| |||||||  | |||||||| |    
T  15716552 -ttttttcccactgagtttttctctagtaaggttttaatgaggcatatccgagatgaacatccaagggggagtgttatgaatattacaagtggatgtcca 15716650  T
Q  202 aatagcaa 209  Q
     |||||||    
T  15716651 tatagcaa 15716658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 33493267 - 33493062
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  33493267 ccttaaccatggttttatcccattgggttt-cctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 33493169  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
            |||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  33493168 ttttttt-ccactgggtttttctctagtaaggttttaatgaggcatatccaagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 33493070  T
Q  202 aatagcaa 209  Q
     |||||||    
T  33493069 tatagcaa 33493062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 29547566 - 29547753
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||||| |||| |||||||||||| || ||||||||| |||||||||||| |||||| |||   || ||||||||| |||||||||||||||||||||||    
T  29547566 ttccttaaccatggttttatcccactgtgttttcctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcactag 29547665  T
Q  100 aannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    ||        |||  |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29547666 aaatttttttccatcgggtttttccatagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatatta 29547753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 40274767 - 40274590
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||   || ||||||||| |||||||||||||||||||||||    
T  40274767 ttccttaaccatggttttatcccattgggttttcctgataaggtttttaacgaagcagattatgacacaaaaggatgttgtactctttttccttcactag 40274668  T
Q  100 aannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    ||        |||  | |||||  | || |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  40274667 aattttttt-ccattgagtttttctctaataaggttttaatgaagcatatcct-gatggacatccaagggggagtgttat 40274590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 145721 - 145538
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||| ||| |||||||||||| |||||||||||| |||||| |||   || ||||||||| |||||||||||||||||||||||||    
T  145721 ccttaaccatggttttattccactgggttttcctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcactagaa 145622  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
           ||||  || ||||  | | ||||||||| ||| |||||||||||  ||||||||||||||||||||||||| |||||    
T  145621 tttttttcccattggatttttctctggtaaggtttcaataaggcatatcctttatggacatccaagggggagtgttatgaatat 145538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 17721555 - 17721730
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||||||||||||||| |||||||||||| |||||||| || ||| |||   || ||||||||| |||||||||||||||||||||||||        ||    
T  17721555 ggttttatcccattggtttttcctggtaatgtttttaatgaagcagattatgacacaaaaggatgttgtactctttttccttcactagaatttattttcc 17721654  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
       || | ||  | |||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |||||||    
T  17721655 tttggttatttctatagtaaggttttaatgaggcgtatcatcgatggacattcaagggggagtgttatgaatatta 17721730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 11441999 - 11441842
Alignment:
Q  26 tgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnncccacggggttttatt 124  Q
    |||||||| |||||||||||||||| |||||| |||  ||| ||||||||| ||||||||||||||||||| |||||        |||  | |||||  |    
T  11441999 tgggtttttctggtaaggtttttaatgaggcagattataacacaaaaggatgttgtactctttttccttcattagaattttttt-ccattgagtttttct 11441901  T
Q  125 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
     |||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||    
T  11441900 atagtaaggttttaatgaggcatat-cttgatggacatccaagggagagtgttatgaata 11441842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 16168703 - 16168782
Alignment:
Q  115 gggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattgg 194  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||| |||| |||| ||||    
T  16168703 gggtttttttttagtaaagttttaatgaggcatatccttgatgaacatccaaggaggagtgttatgaataataatgttgg 16168782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 15552692 - 15552874
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||| ||| |||||||||||||||||||||  ||||| |||   || ||||||||| ||||||||||||||||||||| ||     
T  15552692 ccttaaccatggttttatcccactggattttcctggtaaggtttttaatcaggcatattatgacacaaaaggatgttgtactctttttccttcact-gag 15552790  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
           | ||   |||||| | ||||||||||||||||||| |||||| | |||||||||| |||| ||||||| || |||||    
T  15552791 attttttcacatttggttttttcttagtaaggttttaatgagacatatcattgatggacatctaaggtggagtgtaatgaatat 15552874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 26028525 - 26028699
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactc-tttttccttcactag-aannnnnnnc 109  Q
    |||||||||||| || ||||| ||||||||||||||||||||||| ||| | || ||||||| | |||||||| ||||||||| ||||| ||       |    
T  26028525 ggttttatcccactgagtttttctggtaaggtttttaacgaggcagattaagacacaaaaggttgttgtactcttttttcctttactagaaatttttttc 26028624  T
Q  110 ccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |||  || ||||  | || |||||||||||||||||| |||||  |||||||||||||||||||| |||| ||||    
T  26028625 ccattggatttttctctaataaggttttaatgaggcacatccttcatggacatccaagggggagtattatgaata 26028699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 22576194 - 22576022
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||||||||||| ||| |||||||  |||||||||||| ||| || |||   || ||||||||  |||||||||||||||||||||||||       | |    
T  22576194 ggttttatcccactggattttcctaataaggtttttaatgagacagattatgacacaaaaggacgttgtactctttttccttcactagaatttttt-ctc 22576096  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    |  |||||||  | ||||||| ||||||||||||||||||| |||||| |||||||||| ||| |||| |||||    
T  22576095 attgggtttttctctagtaagattttaatgaggcatatccttgatggaaatccaaggggaagtattatgaatat 22576022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 38984912 - 38984955
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  38984912 tgttataaatattaatattggatgtccaaatagcaaatgtgtta 38984955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 27317438 - 27317612
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactagaan 102  Q
    ||||||||| |||||| |||| ||||||||||||||||||| ||||||| | |||| |  |  |||    ||||||||||||||||||||||||||  |     
T  27317438 ccttcaccacggttttgtccccttgggttttcctggtaagggttttaacaaagcaaatata--tca----gatattgtactctttttccttcacta--ag 27317529  T
Q  103 nnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
          || |  | ||||| | ||| ||||||||||||||||||||| ||||||| |||| ||| |||||||||||| |||||    
T  27317530 atttttcctattgcgttttttcttaataaggttttaatgaggcatattctcgatgtacattcaacggggagtgttatgaatat 27317612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 37365313 - 37365267
Alignment:
Q  171 gagtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  37365313 gagtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 37365267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 27417658 - 27417607
Alignment:
Q  125 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgtt 177  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  27417658 ttagtaaggttttaatgagacatatcct-gatggacatccaagagggagtgtt 27417607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 18540864 - 18540821
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  18540864 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 18540821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 27347326 - 27347283
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  27347326 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 27347283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 31099712 - 31099669
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  31099712 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 31099669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 35625411 - 35625368
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  35625411 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 35625368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 11654020 - 11654063
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| ||||| || |||||||||||||||||    
T  11654020 tgttataaatattaatagtggatatccaaatagcaaatgtgtta 11654063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 16168591 - 16168641
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacga 53  Q
    |||| |||| ||||||||||||||| ||||| ||||||| |||||||||||    
T  16168591 ccttaaccatggttttatcccattgagtttttctggtaatgtttttaacga 16168641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 28512810 - 28512853
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||    
T  28512810 agtgttataaatattaatattggatgtccaa--agcaaatgtgtta 28512853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 39492740 - 39492777
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaat 211  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  39492740 tgttataaatattaatagtggatgtccaaatagcaaat 39492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 25365726 - 25365510
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25365726 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaatgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 25365627  T
Q  101 annnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtct 200  Q
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  25365626 ttttttttcgcacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatagtggatgttc 25365527  T
Q  201 aaatagcaaatgtgtta 217  Q
    |||||||||||||||||    
T  25365526 aaatagcaaatgtgtta 25365510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 25365999 - 25365839
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25365999 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaatgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 25365900  T
Q  101 annnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggaca 161  Q
            | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25365899 ttttttttcgcacggggttttattttagtaaggttttaatgaggcatatcctcgatggaca 25365839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 35264874 - 35264656
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaa-ggatattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||| |||||||||||||||||||||||||||    
T  35264874 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaaaggatattgtactctttttccttcacta 35264775  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||        |||   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  35264774 gaatttttcttccattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 35264675  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  35264674 ccaaatagcaaatgtgtta 35264656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 23053712 - 23053495
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||||| ||||||||||||||| |||||||||    
T  23053712 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttt-ccttcacta 23053614  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||    
T  23053613 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgt 23053514  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  23053513 ccaaatagcaaatgtgtta 23053495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 28367312 - 28367106
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  28367312 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 28367213  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  28367212 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcaa 28367114  T
Q  202 aatagcaa 209  Q
     |||||||    
T  28367113 tatagcaa 28367106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 21171520 - 21171303
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||| |||||||| |||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  21171520 ccttaaccatggttttgtcccattgggtttttctggtaag-tttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 21171422  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  21171421 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 21171322  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||| ||||||||||||    
T  21171321 ccaaatggcaaatgtgtta 21171303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 30957928 - 30957722
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  30957928 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 30957829  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | | ||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  30957828 -ttttttcccactgggtttttctctcgtaaggtattaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 30957730  T
Q  202 aatagcaa 209  Q
     |||||||    
T  30957729 tatagcaa 30957722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 16675462 - 16675607
Alignment:
Q  72 ggatattgtactctttttccttcactagaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaaggggg 171  Q
    ||||||||||||||||||||||||||||||       || |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||    
T  16675462 ggatattgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaaggggg 16675561  T
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||    
T  16675562 agtgttataaatattaatagtgaatgtccaaatagcaaatgtgtta 16675607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 18080285 - 18080100
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||| |||||||||||||||| |||||||| |||||| |||   || ||||||||| ||||||||||||||||||| | |||    
T  18080285 ccttaaccatggttttatcccactgggttttcctggtaaagtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcattggaa 18080186  T
Q  102 nnnnnnncccacg--gggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
             | ||  |||||||| | ||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||    
T  18080185 tttttttttcccgttgggttttactctagtaaggttttaatgaggcatatccttgatggacatccaagggagaatgttatgaatat 18080100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 24213647 - 24213462
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||| |||| |  ||||||| ||||| |||||||| |||| | |||   || ||||||||| |||||||||||||||||||||||||    
T  24213647 ccttaaccatggttttaccccactacgttttcccggtaatgtttttaatgaggtagattatgacacaaaaggattttgtactctttttccttcactagaa 24213548  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||  ||| |||  | ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  24213547 tttttttcccatcgggattttctctagtaaggttttaatgaggcatatcctcgatagacatccaagggggagtgttaagaatatta 24213462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 17945586 - 17945758
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    ||||||||||||||||||||| || ||||||||||||||||| || ||| | || ||||||| | ||||||||||||||||||||||||         ||    
T  17945586 ggttttatcccattgggtttttcttgtaaggtttttaacgagacagattaagacacaaaaggttgttgtactctttttccttcactagatttttttttcc 17945685  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |  | |||||  | ||||||||||||||||||||| |||||  |||||||||||||| |||||||||| ||||    
T  17945686 attgagtttttctctagtaaggttttaatgaggcacatccttcatggacatccaaggaggagtgttatgaata 17945758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 19780346 - 19780247
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||||||| |||| ||||||||||||||||||||||| |||   || ||||||||| ||||| |||||||||||||||||||    
T  19780346 ccttaaccatggttttatcccattggatttttctggtaaggtttttaacgaggcagattatgacacaaaaggatgttgtaatctttttccttcactagaa 19780247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 34648134 - 34648077
Alignment:
Q  130 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  34648134 aaggttttaatgaggcatatccttgatggacatccaagggggagagttatgaatatta 34648077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 16673334 - 16673388
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  16673334 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggca 16673388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 19780234 - 19780183
Alignment:
Q  127 agtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  19780234 agtaaagttttaatgaggcatatcc-cgatggacatccaagggggagtgttat 19780183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 22231156 - 22231101
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaa 58  Q
    ||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||    
T  22231156 ccttcaccatggttttatcccaatgggattttctggtaaggtttttaacgaggcaa 22231101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 19699182 - 19699353
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnc-cca 112  Q
    |||||||||| || ||||||||||||| |||||||| |||||| ||| | || ||||||| | ||||| |||||||||||  ||||||         |||    
T  19699182 ttttatcccactgagttttcctggtaaagtttttaatgaggcagattaagacacaaaaggttgttgtaatctttttcctttgctagaatttttttttcca 19699281  T
Q  113 cggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
      |||||||  | ||||||||||||||||||||| |||||  |||||||| ||||||||| |||||| ||||    
T  19699282 ttgggtttttctctagtaaggttttaatgaggcacatccttcatggacattcaagggggactgttatgaata 19699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 19479735 - 19479672
Alignment:
Q  115 gggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    ||||||| || ||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||    
T  19479735 gggtttttttctagtaaggttttagtgaggcatatcct-gatggacatccaaggagaagtgttat 19479672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 23059113 - 23059070
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  23059113 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 23059070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 35270440 - 35270397
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  35270440 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 35270397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 21575152 - 21575096
Alignment:
Q  127 agtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    ||||||||||||| || ||||||| | ||||||||||||| |||||||||||||||||    
T  21575152 agtaaggttttaacgaagcatatcgt-gatggacatccaatggggagtgttataaata 21575096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 39654086 - 39654043
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||    
T  39654086 tgttataaatattaatagtggatgtccaaataacaaatgtgtta 39654043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 12026505 - 12026447
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    ||||||||||||||||| ||||||||| |||| | |||||| || ||||||||| ||||    
T  12026505 tagtaaggttttaatgaagcatatccttgatgaatatccaatggagagtgttatgaata 12026447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 24111170 - 24111208
Alignment:
Q  14 gttttatcccattgggttttcctggtaaggtttttaacg 52  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  24111170 gttttatccaattgggtttttctggtaaggtttttaacg 24111208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 36205732 - 36205774
Alignment:
Q  12 aggttttatcccattgggttttcctggtaaggtttttaacgag 54  Q
    ||||||||||||||||| |||||||  ||||||||||||||||    
T  36205732 aggttttatcccattggattttcctattaaggtttttaacgag 36205774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 17604567 - 17604600
Alignment:
Q  68 aaaaggatattgtactctttttccttcactagaa 101  Q
    |||||||||||||| |||||||||||||||||||    
T  17604567 aaaaggatattgtattctttttccttcactagaa 17604600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 21178211 - 21178166
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||    
T  21178211 agtgttataaatattaatagtggatgttcaaatggcaaatgtgtta 21178166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 29948653 - 29948594
Alignment:
Q  124 tttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |||||| ||||||||| || ||||||| | ||| |||||||||||||||||||||| ||||    
T  29948653 tttagtgaggttttaacgatgcatatcat-gatagacatccaagggggagtgttatgaata 29948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 35104964 - 35105019
Alignment:
Q  123 ttttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||| || ||||||||||    
T  35104964 ttttagtaaggttttaacgaggcatatcct-tatgcacatccatggaggagtgttat 35105019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29185352 - 29185566
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29185352 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 29185451  T
Q  101 a-nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtc 199  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  29185452 attttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat---tattaatattggatgtc 29185548  T
Q  200 taaatagcaaatgtgtta 217  Q
     |||||| ||||||||||    
T  29185549 caaatagaaaatgtgtta 29185566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25830719 - 25830500
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  25830719 ttccttcaccaaggttttatcccattgggtttttctaataaggtttttaacgaggcagttcaaattcaaaaggatattgtactctttttccttcactaga 25830620  T
Q  101 annnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtct 200  Q
    |         ||  ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||     
T  25830619 atttttttttcattgggttttattttagtaaggttttaacgaggcatatcctcgatggacattcaa-ggggagtgttataaatattaatagtggatgtcc 25830521  T
Q  201 aaatagcaaatgtgttaatgg 221  Q
    |||||||||||  ||||||||    
T  25830520 aaatagcaaattggttaatgg 25830500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 8247935 - 8248153
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||| ||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  8247935 ccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 8248034  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  8248035 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 8248134  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  8248135 ccaaatagcaaatgtgtta 8248153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 558203 - 558005
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattca-aactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| | | ||| ||||||||| ||||||||||||||||||||| |||    
T  558203 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgagacaaattataacacaaaaggatgttgtactctttttccttcactggaa 558104  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||    
T  558103 tttttt-cccactgggtttttctctagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatattataagtggatgtcta 558005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 340627 - 340409
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  340627 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 340528  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||    
T  340527 gaatttttctcctattaggtttttctctaataaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagcggatgt 340428  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | ||||| |||||||||||    
T  340427 ccaaataacaaatgtgtta 340409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 25498883 - 25499088
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||  ||||||||||||||||||||||||    
T  25498883 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgctgtactctttttccttcactagaa 25498982  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
            |||  |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | |||||||| |    
T  25498983 tttttt--ccattgggtttttctctagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatattataagtggatgtcca 25499080  T
Q  202 aatagcaa 209  Q
     |||||||    
T  25499081 tatagcaa 25499088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 32148305 - 32148489
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||| | |||    
T  32148305 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcattggaa 32148404  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  32148405 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatatta 32148489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 16648251 - 16648457
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  16648251 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 16648350  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | |||||||||||||||||| |||||||   |||||||||||||||||| |||||| |||||||  | |||||||| |    
T  16648351 -ttttttcccactgggtttttctctagtaaggttttaatgagacatatccgaaatggacatccaagggggaatgttatgaatattacaagtggatgtcca 16648449  T
Q  202 aatagcaa 209  Q
     |||||||    
T  16648450 tatagcaa 16648457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 17622612 - 17622818
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  17622612 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 17622711  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | |||||||||||||||||| |||||||   |||||||||||||||||| |||||| |||||||  | |||||||| |    
T  17622712 -ttttttcccactgggtttttctctagtaaggttttaatgagacatatccgaaatggacatccaagggggaatgttatgaatattacaagtggatgtcca 17622810  T
Q  202 aatagcaa 209  Q
     |||||||    
T  17622811 tatagcaa 17622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 42208731 - 42208927
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||       |||    
T  42208731 ggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcact-gaaattttttccc 42208829  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaa 209  Q
    || || ||||  | |||||||||||||||||||||| |||  | |||||||||||||||||||||||| |||||||  | |||||||| | |||||||    
T  42208830 actggatttttctctagtaaggttttaatgaggcatgtccgaggtggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 42208927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 42162586 - 42162380
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||  ||| ||||||||| |||||||||||||||||||||  ||    
T  42162586 ccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactgaaa 42162487  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||| ||||||||||  ||| ||||||||||||| |||||||| |||||||  | |||||||| |    
T  42162486 tttttttcccactgggtttttatctagtaaggttttaat-aggcatatccaagattgacatccaaggggaagtgttatgaatattacaagtggatgtcca 42162388  T
Q  202 aatagcaa 209  Q
     |||||||    
T  42162387 tatagcaa 42162380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 20125095 - 20125277
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||| |||||||||||| ||||||||||||  ||||| |||  ||| ||||||||| |||||||||||||| |||||| ||     
T  20125095 ccttaaccatggttttatcccactgggttttcctgataaggtttttaatcaggcagattataacacaaaaggatgttgtactctttttctttcact-gag 20125193  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
           ||||  || |||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||||||| |||||    
T  20125194 attttttcccattggattttttcttagtaaggttttaacgaggcatatctttgatggacatccaagggggagtgttatgaatat 20125277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 22477313 - 22477226
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||||| |||||||||||||||  ||||||||||||||||||| |||   || ||||||||| |||||||||||||| ||||||||||    
T  22477313 ttttattccattgggttttccttataaggtttttaacgaggcagattatgacacaaaaggatgttgtactctttttctttcactagaa 22477226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 22822535 - 22822580
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  22822535 agtgttataaatattaatattggatgtccaaatagcaaatgtgtta 22822580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 22826840 - 22826883
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  22826840 tgttataaatattaatattggatgtccaaatagcaaatgtgtta 22826883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 26457173 - 26456994
Alignment:
Q  8 accaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnn 106  Q
    |||| ||||||||||||||||||||| |||  |||||||||||||||||| |||   ||  |||| ||||||| |||||||||| ||||||||||         
T  26457173 accatggttttatcccattgggtttttctgaaaaggtttttaacgaggcagattatcacataaaatgatattgcactctttttc-ttcactagaattttt 26457075  T
Q  107 nncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
      ||   | | ||||  | || ||||||||||||||  ||||||||||||||||||||||||  || |||||| |||||||    
T  26457074 taccattgagttttttctctaataaggttttaatgaatcatatcctcgatggacatccaaggaagaatgttatgaatatta 26456994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 29176544 - 29176587
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  29176544 tgttataaatattaatattggatgtccaaatagcaaatgtgtta 29176587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 20362601 - 20362655
Alignment:
Q  125 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    |||||||||||||||||||||||||||  |||||||||||||  |||||||||||    
T  20362601 ttagtaaggttttaatgaggcatatccatgatggacatccaaaagggagtgttat 20362655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 34326237 - 34326307
Alignment:
Q  115 gggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    |||||||| | |||||||||||||||||||||||||||  ||||| |||||| | |||||||||| |||||    
T  34326237 gggttttactctagtaaggttttaatgaggcatatccttaatggatatccaatgaggagtgttatgaatat 34326307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 5998160 - 5998249
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggc-aattcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    ||||||||||||||| |||||| | ||||||||||||||||||| ||||   || |||||||||  || | |||||||||||||||||||    
T  5998160 ggttttatcccattgagttttcttagtaaggtttttaacgaggcaaattatcacacaaaaggattatgcattctttttccttcactagaa 5998249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 23818925 - 23818864
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    |||||| |||||||||||||||||||||||||||||||||| | | | |||||| |||||||    
T  23818925 tagtaatgttttaatgaggcatatcctcgatggacatccaatgagaaatgttatgaatatta 23818864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 7578472 - 7578528
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    ||||||| ||||||| |||||||||||  ||||||||||||||||||||||||| ||||    
T  7578472 tagtaagattttaataaggcatatcct--atggacatccaagggggagtgttatgaata 7578528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 8242541 - 8242584
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  8242541 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 8242584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 2068882 - 2068837
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgttaat 219  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||    
T  2068882 tgttataaatattaatagtggatgtccaaatagcaaatgagttaat 2068837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 14997660 - 14997607
Alignment:
Q  116 ggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaaggg 169  Q
    |||||| | ||||||| |||||||||||| |||||||||||| |||||||||||    
T  14997660 ggttttttcttagtaaagttttaatgaggtatatcctcgatgtacatccaaggg 14997607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 34326146 - 34326218
Alignment:
Q  26 tgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcact 97  Q
    |||||||| ||| |||||||||||| |||||| |||   || ||||||||| |||||||||||||||||||||    
T  34326146 tgggtttttctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcact 34326218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 346686 - 346643
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||  ||||||| |||||||||||||||||    
T  346686 tgttataaatattaatagcggatgtccaaatagcaaatgtgtta 346643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 14719624 - 14719509
Alignment:
Q  68 aaaaggatattgtactctttttccttcactagaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaag 167  Q
    |||||||||||||| |||||||||||||||||||       ||   | | |||| || |||||| |||||||||||||||||| | | ||||||| |||     
T  14719624 aaaaggatattgtattctttttccttcactagaatttttttccattgagttttttttctagtaaagttttaatgaggcatatcat-gttggacatgcaaa 14719526  T
Q  168 ggggagtgttataaata 184  Q
    |||||||||||| ||||    
T  14719525 ggggagtgttatgaata 14719509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14997768 - 14997712
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    |||||||| || |||||| |||||||  |||||| |||||||||||||||| |||||    
T  14997768 ttccttcagcatggttttctcccattcagttttcatggtaaggtttttaacaaggca 14997712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2978567 - 2978351
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcactaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2978567 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaaactcaaaaagatattgtactctttttccttcactaga 2978468  T
Q  101 annnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtct 200  Q
    |        ||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  2978467 attttttttcccatgggttttattttaataaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatagtggatgtcc 2978368  T
Q  201 aaatagcaaatgtgtta 217  Q
    ||||| |||||||||||    
T  2978367 aaataacaaatgtgtta 2978351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 49487058 - 49486840
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  49487058 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 49486959  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||        | |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49486958 gaatttttcttctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 49486859  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  49486858 ccaaatagcaaatgtgtta 49486840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 9724955 - 9724748
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||  ||| ||||||||| |||||||||||||||||||||||||    
T  9724955 ccttaaccatggttttatcccatttggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactagaa 9724856  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||   ||||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| || |||||||| |    
T  9724855 ttttttcccactggggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattactagtggatgtcca 9724756  T
Q  202 aatagcaa 209  Q
     |||||||    
T  9724755 tatagcaa 9724748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 21883249 - 21883467
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  21883249 ccttaaccatggttttgtcccattgggttttcttggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 21883348  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||    
T  21883349 gaatttttctcctattaggtttttctctaataaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagcggatgt 21883448  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  21883449 ccaaatagcaaatgtgtta 21883467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 13990660 - 13990866
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  13990660 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 13990759  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  13990760 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 13990858  T
Q  202 aatagcaa 209  Q
     |||||||    
T  13990859 tatagcaa 13990866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 23344204 - 23344410
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  23344204 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 23344303  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  23344304 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 23344402  T
Q  202 aatagcaa 209  Q
     |||||||    
T  23344403 tatagcaa 23344410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 40800969 - 40800763
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  40800969 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 40800870  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  40800869 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 40800771  T
Q  202 aatagcaa 209  Q
     |||||||    
T  40800770 tatagcaa 40800763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 15752819 - 15752615
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaaggatattgtactctttttccttcactagaannnnnnnc 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||  || || |||   |||||||||||||||||||||||||||||       |    
T  15752819 ggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaa---gatattgtactctttttccttcactagaatttttctc 15752723  T
Q  110 ccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaa 209  Q
    | |   ||||||  | ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  15752722 ctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggaatgttataaatattaatagtggatgtccaaatagcaa 15752623  T
Q  210 atgtgtta 217  Q
    ||||||||    
T  15752622 atgtgtta 15752615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 2168982 - 2168776
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  2168982 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 2168883  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||  |||||||  | ||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||  | |||||||| |    
T  2168882 -ttttttcccattgggtttttctctagtaaggttttaatgaggcatatccgatatggacatccaagggggagtgttatgaatattacaagtggatgtcca 2168784  T
Q  202 aatagcaa 209  Q
     |||||||    
T  2168783 tatagcaa 2168776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 3110839 - 3110634
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  3110839 ccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 3110740  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||  ||||||| | ||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  3110739 -ttttttcccattgggtttt-tcttagtaaggttttaatgaggcatatctgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 3110642  T
Q  202 aatagcaa 209  Q
     |||||||    
T  3110641 tatagcaa 3110634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 13980987 - 13980784
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||  ||  ||||||||| ||||||||||||||||||| | |||    
T  13980987 ccttaaccatggttttttcccattgggtttttctggtaaggtttttaacgaggcagattataatacaaaaggatgttgtactctttttccttcaatggaa 13980888  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           |||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||  | ||||||||||    
T  13980887 tttttt-cccactaggtttttctttagtaaggttttaatgaggcatatcctcgatggacatccaaggaagagtgttatgaatattataagtggatgtcta 13980789  T
Q  202 aatag 206  Q
     ||||    
T  13980788 tatag 13980784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 17032948 - 17033132
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||  |||   || |||| |||| |||||||||||||||||||||||    
T  17032948 ttccttaaccatggttttatcccattaggttttcttggtaaggtttttaacgaggcggattatgacacaaagggatgttgtactctttttccttcactag 17033047  T
Q  100 aannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    ||       ||  |||| |||| || ||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||||    
T  17033048 aatttttttccagcgggttttt-ttctagtaaggttttaatgaggcatatccttgaaggacatccaaggaggagtgttatgaatat 17033132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 21477436 - 21477527
Alignment:
Q  118 ttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaa 209  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  21477436 ttttatcttagtaaggtgttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaa 21477527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 44122350 - 44122179
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    ||||||||||||  ||||||| ||| |||||||||||| |||||| |||   || ||||||||| ||||||||||||||||||||||||        |||    
T  44122350 ggttttatcccaccgggtttttctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcactagattttttttccc 44122251  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |  || ||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  44122250 attggatttttctatagtaaggttttaatgaggcatatcct-gatggacatccaagggggagtgttatgaata 44122179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 15636611 - 15636446
Alignment:
Q  14 gttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccca 112  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||| |||   || |||||| || |||||||||||||||||||||||||       ||||    
T  15636611 gttttatcccactgggttttcctgataaagtttttaatgaggcagattatgacacaaaagtatgttgtactctttttccttcactagaa-tttttcccca 15636513  T
Q  113 cggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
      |||||||  | |||||||||||||||||| |||||||| || | |||||||||||||||||||||    
T  15636512 ttgggtttttctctagtaaggttttaatgagacatatccttgacgaacatccaagggggagtgttat 15636446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 12990766 - 12990940
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnc-c 110  Q
    |||||||||||| | | |||| |||||||||||||||| |||||  |||   || ||||||||| ||||||||||||||||||||||||          |    
T  12990766 ggttttatcccactagatttttctggtaaggtttttaatgaggcggattatgacacaaaaggatgttgtactctttttccttcactagattttttttttc 12990865  T
Q  111 cacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatat 185  Q
    ||  | |||||  | ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||    
T  12990866 cattgagtttttctctagtaaggttttaatgaagcatatccttgatggacatccaaggggaagtgttatgaatat 12990940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 39875617 - 39875726
Alignment:
Q  68 aaaaggatattgtactctttttccttcactagaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaag 167  Q
    |||| |||||||||||||||||||||||||||||       || |   |||||| || |||||||||||||||||| |||||||| ||||||||||||||    
T  39875617 aaaatgatattgtactctttttccttcactagaatttttttcc-attaggtttttttctagtaaggttttaatgagacatatcct-gatggacatccaag 39875714  T
Q  168 ggggagtgttat 179  Q
    | ||||||||||    
T  39875715 gaggagtgttat 39875726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 3170354 - 3170301
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttat 179  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  3170354 tagtaaggttttaatgaggtatatcctcgatggacatccaaagggaagtgttat 3170301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 29225242 - 29225334
Alignment:
Q  129 taaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaatgtgttaatgg 221  Q
    |||||||||||||||||||||| |||||||||||||||| | |||| |||| |||||||  | || ||||| | ||| |||||| ||||||||    
T  29225242 taaggttttaatgaggcatatcttcgatggacatccaagagagagtattatgaatattatgagtgaatgtccatataacaaatgggttaatgg 29225334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 20458999 - 20458942
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||    
T  20458999 tagtaaggttttaatgagacatatcct-gatgggcatccaagggggagtgttatgaata 20458942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 21458331 - 21458377
Alignment:
Q  171 gagtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  21458331 gagtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 21458377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 21453158 - 21453203
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  21453158 agtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 21453203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 15758452 - 15758408
Alignment:
Q  173 gtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  15758452 gtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 15758408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 2982338 - 2982295
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  2982338 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 2982295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 7870329 - 7870266
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaat 189  Q
    ||||||||||||| |||||| |||||| ||| ||||||||||||||||| |||| |||| ||||    
T  7870329 tagtaaggttttagtgaggcgtatccttgatagacatccaagggggagtattatgaataataat 7870266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 21473104 - 21473147
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  21473104 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 21473147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 21877164 - 21877207
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  21877164 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 21877207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 49491380 - 49491337
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  49491380 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 49491337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 27387722 - 27387677
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggcaa 58  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||    
T  27387722 ggttttatcccattgggttttacaggtaaggtttttaatgaggcaa 27387677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 27547039 - 27547217
Alignment:
Q  8 accaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnn 106  Q
    |||| |||||||||| ||| |||||| |||||| |||||||||| ||||| |||   || ||||| ||| ||||||||||||||||| | ||||          
T  27547039 accatggttttatcctattaggtttttctggtatggtttttaacaaggcagattatgacacaaaaagatgttgtactctttttcctttattagatttttt 27547138  T
Q  107 nnccca-cggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
       ||| |||| ||||  | |||||||||||||||||| ||| || | ||||||||||||||  |||||||||| ||||    
T  27547139 ttaccatcgggttttttctctagtaaggttttaatgagacatgtctttgatggacatccaagcaggagtgttatgaata 27547217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 20454446 - 20454502
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    |||||| ||||| ||||||||| |||||||||||||| ||||||||| | |||||||    
T  20454446 ttccttaaccaatgttttatccaattgggttttcctgctaaggttttcagcgaggca 20454502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 27351066 - 27351110
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||    
T  27351066 ggttttatcccattgggttttacaggtaaggtttttaatgaggca 27351110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 10937252 - 10937287
Alignment:
Q  134 ttttaatgaggcatatcctcgatggacatccaaggg 169  Q
    |||||| |||||||||||||||||||||||||||||    
T  10937252 ttttaacgaggcatatcctcgatggacatccaaggg 10937287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 19478366 - 19478413
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggcaatt 60  Q
    |||||||||| |||||||||| | |||||||||||||| |||||||||    
T  19478366 ggttttatcctattgggttttacaggtaaggtttttaatgaggcaatt 19478413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 25468501 - 25468554
Alignment:
Q  43 gtttttaacgaggcaattcaaactcaaaaggatattgtactctttttccttcac 96  Q
    |||||||| |||||| |||| || ||||| ||| ||||||||||||||||||||    
T  25468501 gtttttaatgaggcacttcacacccaaaaagatgttgtactctttttccttcac 25468554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 25468577 - 25468622
Alignment:
Q  123 ttttagtaaggttttaatgaggcatatcctcgatggacatccaagg 168  Q
    ||||||||||||||||||||| |||||||  |||| ||||||||||    
T  25468577 ttttagtaaggttttaatgagacatatccaagatgaacatccaagg 25468622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 19482154 - 19482110
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    ||||||||||||||||||||| | || ||||||||||| ||||||    
T  19482154 ggttttatcccattgggttttacaggcaaggtttttaatgaggca 19482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 26176150 - 26176103
Alignment:
Q  12 aggttttatcccattgggttttcct--ggtaaggtttttaacgaggca 57  Q
    |||||||||||||||||||||||||  | |||||||||||| ||||||    
T  26176150 aggttttatcccattgggttttcctaagataaggtttttaatgaggca 26176103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 111700 - 111918
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||  || || ||||||| |||||||||||||||||||||||||    
T  111700 ccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcacta 111799  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  111800 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgt 111899  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  111900 ccaaatagcaaatgtgtta 111918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 13848 - 14068
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaa-ggatattgtactctttttccttcac 96  Q
    |||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||| |||  || || ||||| |||||||||||||||||||||||||    
T  13848 ttccttaaccatggttttgtcccattgggttttccgggtaaggtttttaacgaggcagattatcacacacaaaacggatattgtactctttttccttcac 13947  T
Q  97 tagaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggat 196  Q
    |||||       || |   | ||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  13948 tagaatttttctcctattagatttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggat 14047  T
Q  197 gtctaaatagcaaatgtgtta 217  Q
    ||| |||||||||||||||||    
T  14048 gtccaaatagcaaatgtgtta 14068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 19437870 - 19437653
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||  || || ||||||| ||||||||||||||| |||||||||    
T  19437870 ccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttt-ccttcacta 19437772  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||    
T  19437771 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgt 19437672  T
Q  199 ctaaatagcaaatgtgtta 217  Q
    | |||||||||||||||||    
T  19437671 ccaaatagcaaatgtgtta 19437653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 22430176 - 22430382
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  22430176 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 22430275  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  22430276 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 22430374  T
Q  202 aatagcaa 209  Q
     |||||||    
T  22430375 tatagcaa 22430382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 22435770 - 22435976
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  22435770 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 22435869  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  22435870 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 22435968  T
Q  202 aatagcaa 209  Q
     |||||||    
T  22435969 tatagcaa 22435976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 43776820 - 43777025
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||| |||    
T  43776820 ccttaaccatggttttatcccattgggttttcctggtaaagtttttaacgaggcagattataacacaaaaggatattgtactctttttccttcactggaa 43776919  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  43776920 --tttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 43777017  T
Q  202 aatagcaa 209  Q
     |||||||    
T  43777018 tatagcaa 43777025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 636110 - 636294
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  636110 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 636209  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  636210 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatatta 636294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 7910294 - 7910110
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  7910294 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 7910195  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||| |||||||  | |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||    
T  7910194 -ttttttcccactgggtttttctctagtaaggttttaatgagacatatccgagatggacatccaagggggagtgttatgaatatta 7910110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 14898611 - 14898795
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  14898611 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 14898710  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||| |||||||  | |||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||    
T  14898711 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatattcgagatggacatccaagggggagtgttatgaatatta 14898795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 25445392 - 25445171
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaagg-atattgtactctttttccttcacta 98  Q
    |||| |||| |||||| | |||||||||||||||||||| |||||||||||| || |||  || || ||||||| |||||||||||||||||||||||||    
T  25445392 ccttaaccatggttttgttccattgggttttcctggtaaagtttttaacgagacagattatcatacacaaaagggatattgtactctttttccttcacta 25445293  T
Q  99 gaannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgt 198  Q
    |||       || |   ||||||  | |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |||||||    
T  25445292 gaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatctaagggg-agtgttataaatattaatagtggatgt 25445194  T
Q  199 ctaaatagcaaatgtgttaatgg 221  Q
    | |||||||||||||||||||||    
T  25445193 ccaaatagcaaatgtgttaatgg 25445171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 24053606 - 24053404
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||  || || |||   |||||||||||||||||||||||||||||       |      
T  24053606 ttttgtcccattgggttttcctgataaggtttttaacgaggcagattatcatacacaa---gatattgtactctttttccttcactagaatttttctctt 24053510  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtctaaatagcaaat 211  Q
    |   ||||||  | ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  24053509 attaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaat 24053410  T
Q  212 gtgtta 217  Q
    ||||||    
T  24053409 gtgtta 24053404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 43287723 - 43287509
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-att--caaactcaaaaggatattgtactctttttccttcactag 99  Q
    |||| |||| |||||| |||||||| ||||||||||||||||||||||||||||| |||  || || |||   ||||||| ||||||||| |||||||||    
T  43287723 ccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagattatcatacacaa---gatattgcactcttttttcttcactag 43287627  T
Q  100 aannnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtc 199  Q
    ||       || |   | ||||  | || ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||| | ||||||    
T  43287626 aatttttctcctattagatttttctctattaaggttttaatgaggcatatcctcaatgaacatccaaggggaagtgttataaacattaatagtagatgtc 43287527  T
Q  200 taaatagcaaatgtgtta 217  Q
     |||||||||||||||||    
T  43287526 caaatagcaaatgtgtta 43287509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 17319835 - 17319655
Alignment:
Q  14 gttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccca 112  Q
    |||||||||||||  ||||||||| ||||||||||||||||||| |||  ||| |||| ||||  |||||| |||||||||||||||||       ||||    
T  17319835 gttttatcccattatgttttcctgataaggtttttaacgaggcagattataacacaaa-ggatgatgtactatttttccttcactagaatttttttccca 17319737  T
Q  113 cggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattgg 194  Q
    | | |||||  | ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||| ||||    
T  17319736 ccgagtttttctctagcaaggttttaattaggcatatccttgatggacatccaagggggagtgttatgaataataatgttgg 17319655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16443664 - 16443470
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtac-tctttttccttcacta 98  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||| ||| || ||| | ||||||||||||||    
T  16443664 ttccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaatgatgttatacttttttttccttcacta 16443565  T
Q  99 gaannnnnnncccacggggttttattttagt-aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 192  Q
     |        ||||| || ||||  | |||| |||||||||||||| |||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  16443564 aattttttttcccaccggatttttctctagtaaaggttttaatgagacatatctttcatggacatccaagggggagtgttatgaataataatatt 16443470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 25231811 - 25231996
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaa-actcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||| | | ||||||||||||||||||||| |||| |  |||  || ||||||||| |||||||| ||||||||||||||||    
T  25231811 ccttaaccatggttttatcccactagattttcctggtaaggtttttaatgaggaagatcatgacacaaaaggatgttgtactcattttccttcactagaa 25231910  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           | ||  |||||||  | ||||||||||||||||||||||||| | |||||| |||||||||||| |||||| |||||||    
T  25231911 tttttttctcatcgggtttttctctagtaaggttttaatgaggcatatctttgatggatatccaagggggaatgttatgaatatta 25231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 5836285 - 5836224
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5836285 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatatta 5836224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 7385174 - 7385002
Alignment:
Q  15 ttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnncccac 113  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| ||| | || ||||||| | |||||||||||||||||||||||||       | ||     
T  7385174 ttttatcccactggattttcctggtaaggtttttaatgaggcagattaagacacaaaaggttgttgtactctttttccttcactagaatttttttctcat 7385075  T
Q  114 ggggttttattttagtaaggttttaatgagg--catatcctcgatggacatccaagggggagtgttataaata 184  Q
     | ||||| || |||||| ||||||||||||  || |||||  ||||||||||||||||||||||||| ||||    
T  7385074 tgagtttttttctagtaatgttttaatgaggcacacatccttcatggacatccaagggggagtgttatgaata 7385002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 19912092 - 19912272
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||| ||||||||||||||||||||| |||| || |||||  |||   || ||||||||| ||||||||||||||| |||||||||    
T  19912092 ccttaaccatggttttattccattgggttttcctggtaagatttt-aatgaggctcattatgacacaaaaggatgttgtactctttttccatcactagaa 19912190  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
            |||  |||||||  | ||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  19912191 ttttttttccattgggtttttctataggaaggttttaatgaggcatatccta-atggacatccaagggggagtgttatgaata 19912272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 19089301 - 19089472
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggcaattcaa-actcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||||||| ||| ||| |||| | |||||||||| ||||||||||| | |  || ||||||||| ||||||||||||| |||||||||||       ||     
T  19089301 ggttttattccactggatttttcaggtaaggtttataacgaggcaaattacgacacaaaaggatgttgtactcttttttcttcactagaatttttttcca 19089400  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
     |||| |||| | | |||||||||||||||||||||||| |  ||||||||||||| ||||||||||| ||||    
T  19089401 tcgggtttttctct-agtaaggttttaatgaggcatatctttcatggacatccaagagggagtgttatgaata 19089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 1525594 - 1525654
Alignment:
Q  127 agtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  1525594 agtaagattttaatgaggcatatccgagatggacatccaagggggagtgttatgaatatta 1525654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 11311882 - 11312058
Alignment:
Q  8 accaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnn 106  Q
    |||| |||||||||||| ||| ||||||||||||||||||||| |||||| ||| | || ||||||| | ||||||| |||||||||||||||||         
T  11311882 accatggttttatcccactgg-ttttcctggtaaggtttttaatgaggcagattaagacacaaaaggttgttgtactttttttccttcactagaattttt 11311980  T
Q  107 nncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
      || |  || ||||  | ||||||||||||||||||||| |||||   |||||||||||| | || |||||| ||||    
T  11311981 ttcctattggatttttctctagtaaggttttaatgaggcacatccttcgtggacatccaagagagaatgttatgaata 11312058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 21289877 - 21289782
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcact 97  Q
    |||| |||| |||||||||||| || |||||||||||||||||||||| |||| | |||   || ||||||||| |||||||||||||||||||||    
T  21289877 ccttaaccatggttttatcccactgagttttcctggtaaggtttttaatgaggtagattatgacacaaaaggatgttgtactctttttccttcact 21289782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 19443271 - 19443228
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  19443271 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 19443228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 34111205 - 34111139
Alignment:
Q  117 gttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    ||||| || |||||| |||||||||||||||||||| |||||||||| || |||||||||||| ||||    
T  34111205 gtttttttctagtaaagttttaatgaggcatatcct-gatggacatcgaaaggggagtgttatgaata 34111139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 19933265 - 19933310
Alignment:
Q  123 ttttagtaaggttttaatgaggcatatcctcgatggacatccaagg 168  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||    
T  19933265 ttttagtaacgttttaatgattcatatcctcgatggacatccaagg 19933310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 24056784 - 24056739
Alignment:
Q  172 agtgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||    
T  24056784 agtgttataaatattaatagtggatgtccagatagcaaatgtgtta 24056739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 25454876 - 25454833
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| || ||||| |||||||||||||||||    
T  25454876 tgttataaatattaatagtgaatgtccaaatagcaaatgtgtta 25454833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 31433045 - 31433092
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgttaatgg 221  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||||    
T  31433045 tgttataaatattaatagtggatgtccaaatagcaaattagttaatgg 31433092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 43293297 - 43293254
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  43293297 tgttataaacattaatagtggatgtccaaatagcaaatgtgtta 43293254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 26538968 - 26538914
Alignment:
Q  130 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    |||||||||||||| ||||||||  |||||||||||| ||| |||||||| ||||    
T  26538968 aaggttttaatgagacatatccttcatggacatccaaagggaagtgttatgaata 26538914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 346002 - 345796
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  346002 ccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaa 345903  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtcta 201  Q
           ||||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||  | |||||||| |    
T  345902 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 345804  T
Q  202 aatagcaa 209  Q
     |||||||    
T  345803 tatagcaa 345796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 39271 - 39454
Alignment:
Q  3 ccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaa 101  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||| ||| |||  ||| ||||||||| ||||||||||||||||||||| |||    
T  39271 ccttaaccatggttttatcccattgggttttcttggtaaggtttttaacgatgcagattataacacaaaaggatgttgtactctttttccttcactggaa 39370  T
Q  102 nnnnnnncccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
           ||||| |||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  39371 -ttttttcccactgggtttttctctagtaaggttttaatgaggcatatcctcgatggacat-caagggggagtgttatgaatatta 39454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 11432 - 11607
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgtactctttttccttcactagaannnnnnnccc 111  Q
    |||||||||||| |||||||| |||||||||||||||| |||||| |||   |  |||||||||||||||||||||||||||||||||||        ||    
T  11432 ggttttatcccactgggtttttctggtaaggtttttaatgaggcagattatgatacaaaaggatattgtactctttttccttcactagaattttttttcc 11531  T
Q  112 acggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 187  Q
    |  || ||||  | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  11532 atcggatttttctctagtatggttttaatgaggcatatcctcgatggacatccaagagggagtgttatgaatatta 11607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 159733 - 159677
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  159733 ttccatcaccatggttttatccctttgggttttcctggtaaggtttttaacgaggca 159677  T

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Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 19763 - 19820
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||||| ||||    
T  19763 tagtaaggttttaatgaggcatatcc-agatggacatccaaggggaagtgttatgaata 19820  T

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Target: scaffold0062; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29931 - 29988
Alignment:
Q  126 tagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaata 184  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||||| ||||    
T  29931 tagtaaggttttaatgaggcatatcc-agatggacatccaaggggaagtgttatgaata 29988  T

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Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 19692 - 19736
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    |||||||||| | |||||||| |||||||||||||||| ||||||    
T  19692 ggttttatccaactgggtttttctggtaaggtttttaatgaggca 19736  T

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Target: scaffold0062; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 29860 - 29904
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    |||||||||| | |||||||| |||||||||||||||| ||||||    
T  29860 ggttttatccgactgggtttttctggtaaggtttttaatgaggca 29904  T

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Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 57939 - 57982
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgtgtta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  57939 tgttataaatattaatagtggatgtccaaatagcaaatgtgtta 57982  T

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Target: scaffold0081 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 7715 - 7759
Alignment:
Q  125 ttagtaaggttttaatgaggcatatcctcgatggacatccaaggg 169  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||    
T  7715 ttagtaaggttttaatgaggcatatccttaatgaacatccaaggg 7759  T

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Target: scaffold0591 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 9323 - 9362
Alignment:
Q  174 tgttataaatattaatattggatgtctaaatagcaaatgt 213  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  9323 tgttataaatattaatagtggatgtccaaatagcaaatgt 9362  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 67729 - 67677
Alignment:
Q  1 ttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgag 54  Q
    ||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||    
T  67729 ttccttcaccaag-ttttatcctattggattttcttgttaaggtttttaacgag 67677  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 50620 - 50576
Alignment:
Q  13 ggttttatcccattgggttttcctggtaaggtttttaacgaggca 57  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||||    
T  50620 ggttttaacccattgggttttacaggtaaggtttttaatgaggca 50576  T

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