View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_3 (Length: 633)
Name: NF1914_low_3
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 5 - 619
Target Start/End: Original strand, 3217568 - 3218182
Alignment:
| Q |
5 |
gagaagcataggcatgtgtgtaaatgataatcgtacatagggaattactgaagattaagggaatttagaagcaaaaatgattaaatatgataagttaatt |
104 |
Q |
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| T |
3217568 |
gagaatcatgggcatgtgtgttaatgataatcgtacatagggaattactgaagattaagggaaattagaagcaaaaatgattaaatatgataagttaatt |
3217667 |
T |
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| Q |
105 |
aaataaactgaggtataatttagaagtactatcattcaatataagagaagtctttaacttttgctcatattttattctaaatactataaactatttttac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217668 |
aaataaactgaggtataatttagaagtactatcattcaatataagagaagtctttaacttttgctcatattttattctaaatactataaactatttttac |
3217767 |
T |
|
| Q |
205 |
ttatatttcatttcagatggagaagtcctcaacaatgcacaactgacacttattatacgcactatcaaacaaccatgtgtgcttaattggtattagagaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3217768 |
ttatatttcatttcagatggagaagtcctcaacaatacacaactgacacttattatacgcactatcaaacaagcatgtgtgcttaattggtattagagaa |
3217867 |
T |
|
| Q |
305 |
gagagaaataccaccactctctatacaatttagtcctcgagttaggataacaaactacgaaaactagtggttatctgcatggaaactaagattgagaaat |
404 |
Q |
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| T |
3217868 |
gagagaaataccaccactctctatacaatttagtccttgagttaggataacaaactacgaaaactagtggttatctgcatggaaactaagattgagaaat |
3217967 |
T |
|
| Q |
405 |
ataaaaactgagaggtctagtttctggagtgagtccatgtagagattttgaagttnnnnnnngtggggccttgtgattggaacacttgaaaaggatgaga |
504 |
Q |
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| T |
3217968 |
ataaaaactgagaggtctagtttctggagtgagtccatgtagagattttgaagttaaagaaagtggggccttgtgattggaacacttgaaaaggatgaga |
3218067 |
T |
|
| Q |
505 |
gaaaaatacaagcagcaatttgatgttgaaagagtcttgaggagcaagatactatataatctatggtccacacttcacttcataatgactattcaacgtg |
604 |
Q |
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| T |
3218068 |
gaaaaatacaagcagcaatttgatgttgaaagagtcttgaggagcaagatactatataatctatggtccacacttcacttcataatgactattcaacgtg |
3218167 |
T |
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| Q |
605 |
ggctcaagagaaaac |
619 |
Q |
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||||||||||||||| |
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| T |
3218168 |
ggctcaagagaaaac |
3218182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 3223115 - 3223169
Alignment:
| Q |
375 |
ttatctgcatggaaactaagattgagaaatataaaaactgagaggtctagtttct |
429 |
Q |
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| T |
3223115 |
ttatctgcatggaaactaagattgagaaatatataaactgagaggtctagcttct |
3223169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 3223175 - 3223230
Alignment:
| Q |
467 |
gtggggccttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaa |
522 |
Q |
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| T |
3223175 |
gtggggccttgtagttggaatattggaaaaggatgaaagaaaaatacaagcagcaa |
3223230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 374 - 601
Target Start/End: Complemental strand, 49664876 - 49664652
Alignment:
| Q |
374 |
gttatctgcatggaaactaagattgagaaatataaaaactgagaggtctagtttctggagtgagtccatgtagagattttgaagttnnnnnnngtggggc |
473 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||| ||||| || | ||||||| |
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| T |
49664876 |
gttatatgcatggaaactaagattgagaaatatcaaaactgagaggtctagattctggagttagtccatgaagaaattttaaaagttaataaagtggggc |
49664777 |
T |
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| Q |
474 |
cttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaatttgatgttgaaagagtcttgaggagcaagatactatataatctatggtcc |
573 |
Q |
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| T |
49664776 |
catgtggttgaaatactggaaaaggatgggagaaaaaaacaagcagcaatttgacgttgaaagagtcttggggaataagacac--actaatctttggttc |
49664679 |
T |
|
| Q |
574 |
acacttcacttcataatgactattcaac |
601 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
49664678 |
acacttcacttcataa-gactattcaac |
49664652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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