View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1914_low_4 (Length: 608)
Name: NF1914_low_4
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 39676905 - 39676639
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676905 |
cacaaaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
39676806 |
T |
|
| Q |
107 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676805 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
39676706 |
T |
|
| Q |
207 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676705 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatc |
39676639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 343 - 592
Target Start/End: Complemental strand, 39676569 - 39676320
Alignment:
| Q |
343 |
acttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacga |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
39676569 |
acttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcggagttgaatcttacga |
39676470 |
T |
|
| Q |
443 |
caggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacc |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676469 |
caggagctctggtcattccatcacgaaggacaactgccgaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacc |
39676370 |
T |
|
| Q |
543 |
ttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676369 |
ttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
39676320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 10887007 - 10887272
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10887007 |
cacacaccactgatttccctctcccttcaatccaattcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10887106 |
T |
|
| Q |
107 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10887107 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtataaa |
10887206 |
T |
|
| Q |
207 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatat |
272 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10887207 |
ttctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatat |
10887272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 10867362 - 10867096
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10867362 |
cacacaccactgatttccctctcccttcaatccaattcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10867263 |
T |
|
| Q |
107 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
10867262 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtacaaa |
10867163 |
T |
|
| Q |
207 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatc |
273 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10867162 |
ttctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatatc |
10867096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 10872950 - 10873216
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10872950 |
cacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10873049 |
T |
|
| Q |
107 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10873050 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
10873149 |
T |
|
| Q |
207 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatc |
273 |
Q |
| |
|
|||||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10873150 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatc |
10873216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 10878021 - 10878287
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10878021 |
cacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10878120 |
T |
|
| Q |
107 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10878121 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
10878220 |
T |
|
| Q |
207 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatc |
273 |
Q |
| |
|
|||||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10878221 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatc |
10878287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 10883092 - 10883358
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10883092 |
cacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10883191 |
T |
|
| Q |
107 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10883192 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
10883291 |
T |
|
| Q |
207 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatc |
273 |
Q |
| |
|
|||||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10883292 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatc |
10883358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 345 - 592
Target Start/End: Complemental strand, 10046623 - 10046376
Alignment:
| Q |
345 |
ttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacgaca |
444 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||| |||||||||| ||||| || || |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
10046623 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaaaaactttaactgagaagctcttttagcggagttgaatcttacgacg |
10046524 |
T |
|
| Q |
445 |
ggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacctt |
544 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
10046523 |
ggggctctggtcatgccatcacggaggacaaccgcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaacctt |
10046424 |
T |
|
| Q |
545 |
cagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
| || |||||||| ||||| ||||| ||||| ||||| |||||||||| |
|
|
| T |
10046423 |
ccgtcgttgccatcggcaccgtgtactctttcccatcaagcaacaaag |
10046376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 343 - 592
Target Start/End: Original strand, 10873300 - 10873549
Alignment:
| Q |
343 |
acttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacga |
442 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
10873300 |
acttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacga |
10873399 |
T |
|
| Q |
443 |
caggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacc |
542 |
Q |
| |
|
| || |||| ||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
10873400 |
ctggggctcgggtcattccgtcacggaggacaacggcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaacc |
10873499 |
T |
|
| Q |
543 |
ttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
||| || |||||||| ||||| ||||| || || || ||||||||||||| |
|
|
| T |
10873500 |
ttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10873549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 343 - 592
Target Start/End: Original strand, 10878371 - 10878620
Alignment:
| Q |
343 |
acttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacga |
442 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
10878371 |
acttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacga |
10878470 |
T |
|
| Q |
443 |
caggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacc |
542 |
Q |
| |
|
| || |||| ||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
10878471 |
ctggggctcgggtcattccgtcacggaggacaacggcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaacc |
10878570 |
T |
|
| Q |
543 |
ttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
||| || |||||||| ||||| ||||| || || || ||||||||||||| |
|
|
| T |
10878571 |
ttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10878620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 343 - 592
Target Start/End: Original strand, 10883442 - 10883691
Alignment:
| Q |
343 |
acttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacga |
442 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
10883442 |
acttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacga |
10883541 |
T |
|
| Q |
443 |
caggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacc |
542 |
Q |
| |
|
| || |||| ||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
10883542 |
ctggggctcgggtcattccgtcacggaggacaacggcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaacc |
10883641 |
T |
|
| Q |
543 |
ttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
||| || |||||||| ||||| ||||| || || || ||||||||||||| |
|
|
| T |
10883642 |
ttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10883691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 10046933 - 10046747
Alignment:
| Q |
81 |
gatataccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccgg |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10046933 |
gatataccaataacatccatatcaggaaaatcgctttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccgg |
10046834 |
T |
|
| Q |
181 |
ttgaacaagtgaatctagtgtataaattctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaata |
267 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||| || || ||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
10046833 |
ttgaacatgtaaatctaatgtataaattctttcctgccattgttgctttaatattctgtaatctcgcaaatctacttgacctgaata |
10046747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 345 - 592
Target Start/End: Original strand, 10887362 - 10887609
Alignment:
| Q |
345 |
ttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacgaca |
444 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||| || |
|
|
| T |
10887362 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacg |
10887461 |
T |
|
| Q |
445 |
ggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacctt |
544 |
Q |
| |
|
|| |||||||||||||| || || || ||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
10887462 |
ggggctctggtcattccgtcgcggagcacaacagcggaagcacctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaacctt |
10887561 |
T |
|
| Q |
545 |
cagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
| || |||||||| ||||| |||||||| || || ||||||||||||| |
|
|
| T |
10887562 |
cggttgttgccatgggcaccgtgtattcattcccgtcgagcaacaaag |
10887609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 343 - 592
Target Start/End: Complemental strand, 10867005 - 10866756
Alignment:
| Q |
343 |
acttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacga |
442 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | |
|
|
| T |
10867005 |
acttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgggaagctcttttggcagagttgaatcttacaa |
10866906 |
T |
|
| Q |
443 |
caggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaacc |
542 |
Q |
| |
|
| || |||||||||||||| || || || ||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
10866905 |
cgggggctctggtcattccgtcgcggagcacaaccgcggaagccccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaacc |
10866806 |
T |
|
| Q |
543 |
ttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
592 |
Q |
| |
|
||| || |||||||| ||||| ||||| || || || ||||||||||||| |
|
|
| T |
10866805 |
ttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10866756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 10047110 - 10047038
Alignment:
| Q |
7 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttcc |
79 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
10047110 |
cacacaccactgatttccctctcccttcaatccaattcaccgccgcggctttcttatccgaacaaaaatttcc |
10047038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 37949567 - 37949456
Alignment:
| Q |
67 |
aacaaaaatttccagatataccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccc |
166 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||| ||||| |||||| || |||| |||||||| ||||| || || ||||| || |||||||||||||| |
|
|
| T |
37949567 |
aacagaaattacctgatatgccaataacatccatgtcagggaaatcatttcgaaggaaatcaagaacgttctgcacccctttggagaccatgttcatccc |
37949468 |
T |
|
| Q |
167 |
cattgcatcacc |
178 |
Q |
| |
|
||| |||||||| |
|
|
| T |
37949467 |
catggcatcacc |
37949456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 572
Target Start/End: Complemental strand, 37948325 - 37948236
Alignment:
| Q |
483 |
agcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattc |
572 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||| || || |||||||| || |||||||| |
|
|
| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttctgtagtcgccattggaacagtgtattc |
37948236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 372 - 569
Target Start/End: Original strand, 30709368 - 30709565
Alignment:
| Q |
372 |
atcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaagg |
471 |
Q |
| |
|
||||||||| || ||||||||||| || || ||||||| || ||||||||| || || ||||| || ||||| ||||||||||||||||| | ||| |
|
|
| T |
30709368 |
atcaaaattaagcggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaacaacaggtgctctggtcattccatctctaagc |
30709467 |
T |
|
| Q |
472 |
acaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgta |
569 |
Q |
| |
|
| ||| | ||||| ||||||||||||| |||||||||||| ||||| || ||||||||||| | ||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
30709468 |
aaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgta |
30709565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 30708446 - 30708537
Alignment:
| Q |
87 |
ccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcacc |
178 |
Q |
| |
|
||||| |||||||| |||||||| ||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
30708446 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
30708537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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