View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_6 (Length: 488)
Name: NF1914_low_6
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 49298872 - 49298419
Alignment:
| Q |
17 |
tgatggcataacttggcaatacacaagagagtatgaacatatacacgtactgacatacatcaattatgaatttataatcaaggaaaagtgttgactaaac |
116 |
Q |
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| T |
49298872 |
tgatggcataacttggcaatacac--gagagtatgaacatatacacgtactgacgtacatcaattatgaatttataatcaaggaaaagtgttgactaaac |
49298775 |
T |
|
| Q |
117 |
aaattacagttcacaaacaagttgatcttatcaaaatttggaatcatattcattccatatatattaactttggtaatcaaggaaaagtgtcgaccaatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49298774 |
aaattacagttcacaaacaagttgatcttatcaaaatttggaatcatattcattccatatatattaactttggtaatcaaggaaaagtgtcgaccaatgt |
49298675 |
T |
|
| Q |
217 |
gaggcagcaaacagttgtggtcttcagccgtcacgttctactaacttttgaaggatagcctgccaaaacatacaaatnnnnnnnttatgctcccattacg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49298674 |
gaggcagcaaacagttgtggtcttcagccgtcacgttctactaacttttgaaggatagcctgccaaaacatacaaataaaaaaattatgctcccattacg |
49298575 |
T |
|
| Q |
317 |
actacctctgcacatgtgatatataaccatgattgaaagaactcagagaagttacaaatatactaaagcagaaaacaaagttaacccaaaacacagatca |
416 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49298574 |
actacctctgcacgtgtgatatataaccatgattgaaagaactcagagaagttacaaatatactaaagcagaaaacaaagttaacccaaaacacagatca |
49298475 |
T |
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| Q |
417 |
aatgctcatgtgattcattatgcagcataaaaataaaatacaggtgagcttgtttt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
49298474 |
aatgctcatgtgattcattatgcagcataaaaataaaatacatgtgggcttgtttt |
49298419 |
T |
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