View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1914_low_7 (Length: 484)
Name: NF1914_low_7
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 42562848 - 42563290
Alignment:
| Q |
1 |
ttatactaaatagggcatgtgtaccaaaagtgtcacaaatctataataattaattcctattaataaacatagaacaaccttagttaaacagtcaggcgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42562848 |
ttatactaaatagggcatgtgtaccaaaagtgtcacaaatctataataattaattcctattaataaacatagaacaa------------------gcgaa |
42562929 |
T |
|
| Q |
101 |
tgttgtcaatggtctaaatgcaagatgacctgtgttacatattcaattgaaggaaaattaaattgaaacaattactatagtttagaacggataatagcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42562930 |
tgttgtcaatggtctaaatgcaagatgacctgtgttacatattcaattgaaggaaaattaaattgaaacaattactatagtttagaacggataatagcta |
42563029 |
T |
|
| Q |
201 |
aggcaaattgcaaaagctgcagttagtagtcaattgaaaccagataatgtcatgaacatccatatacacacaaaaagcttcacaaacaagttattaaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42563030 |
aggcaaattgcaaaagctgcagttagtagtcaattgaaatcagataatgtcatgaacatccatatacacacaaaaagcatcacaaacaagttattaaatg |
42563129 |
T |
|
| Q |
301 |
aatgaaaacatacatatcaaaggaaaattagctagacatagggagaagaaaaataacatgaaaaattaaaataactatgatgacattgctcctcgactct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42563130 |
aatgaaaacatacatatcaaaggaaaattagctagacatagagagaagaaaaataacatgaaaaattaaaataactatgatcacattgctcctcgactct |
42563229 |
T |
|
| Q |
401 |
cattgccgtgcaagtacaaccttctcttgtggtttattcgaaaccttaactttgtgtgtcttctatg |
467 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42563230 |
cattgccgtg------caaccttctcttgtggtttattcgaaaccttaactttgtgtgtcttctatg |
42563290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University