View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19150_high_3 (Length: 557)
Name: NF19150_high_3
Description: NF19150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19150_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 38 - 550
Target Start/End: Original strand, 5788986 - 5789497
Alignment:
| Q |
38 |
tcaaatttgtaattaattaaaatttaaacggtctgatctcgatctaacaattatgattgtcctgatgcaaatttacttgcattaacccaatttggttttg |
137 |
Q |
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| T |
5788986 |
tcaaatttgtaattaattaaaatttaaacggtctgatctcgatctaacaattatgattgtcctgatgcaaatttacttgcattaacccaatttggttttg |
5789085 |
T |
|
| Q |
138 |
aaagtccaaatgcctacaagaacagtatatagtaaaatcagaaaatttaactgttgctataaaatgtatatcatgttttttgtgaaagaaatgtatcatg |
237 |
Q |
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| T |
5789086 |
aaagtccaaatgcctacaagaacagtatatagtaaaatcagaaaatttaactgttgctataaa-tgtatatcatgttttttgtgaaagaaatgtatcatg |
5789184 |
T |
|
| Q |
238 |
ttttggtcattgttgatgttgctaatagcaataggagaaaaattcaattgagtcaatactgagatctgaattttctgtattgcagagtggagcagaaaca |
337 |
Q |
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| T |
5789185 |
ttttggtcattgttgatgttgctaatagcaataggagaaaaattcaattgagtcaatactgagatctgaattttctgtattgcagagtggagcagaaaca |
5789284 |
T |
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| Q |
338 |
atcagatgcttgcagaaggtgataggatccttggcattgggcttggctagccttgtttttatgttctagagaagagatttccttgttattgttaccacga |
437 |
Q |
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| T |
5789285 |
atcagatgcttgcagaaggtgataggatccttggcattgggcttggctagccttgtttttatgttctagagaagagatttccttgttattgttaccacga |
5789384 |
T |
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| Q |
438 |
tatattcatatgtatcatttattttcnnnnnnnggtcctgtcttgggctaacattaaatttatttgccattgnnnnnnnaaactcttattattctattac |
537 |
Q |
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| T |
5789385 |
tatattcatatgtatcatttattttctttttttggtcctgtcttgggctaacattaaatttatttgccattgtttttttaaactcttattattctattac |
5789484 |
T |
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| Q |
538 |
atattgatgatgt |
550 |
Q |
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| T |
5789485 |
atattggtgatgt |
5789497 |
T |
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