View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19150_low_2 (Length: 575)
Name: NF19150_low_2
Description: NF19150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19150_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 33778102 - 33777540
Alignment:
| Q |
1 |
ttgctaagggtgtcaaaggtatggctggtcttggaaggactaaagtgtcacttccttcacagttttcatcagcttttagtttcaagaataaatttgcaat |
100 |
Q |
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| T |
33778102 |
ttgctaagggtgtcaaaggtatggctggtcttggaaggactaaagtgtcacttccttcacagttttcatcagcttttagtttcaagaataaatttgcaat |
33778003 |
T |
|
| Q |
101 |
ttgtttaggtactcaaaatggtgtacttttctttggtgatggaccttatctattcaactttgatgaatctaaaaatcttatttacacacctcttattaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33778002 |
ttgtttaggtactcaaaatggtgtacttttctttggtgatggaccttatctattcaactttgatgaatctaaaaatcttatttacacacctcttattaca |
33777903 |
T |
|
| Q |
201 |
aaccctgttagcacttctccaagttctttcttaggtgaaaaatcagttgagtatttcattggtgtgaaatctattagagtttctggtaaaaatgtaaagt |
300 |
Q |
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| T |
33777902 |
aaccctgttagcacttctccaagttctttcttaggtgaaaaatcagttgagtatttcattggtgtgaaatctattagagtttctagtaaaaatgtaaagt |
33777803 |
T |
|
| Q |
301 |
tgaacacaacccttttatctatagaccaaaatggatttggtggaaccaaaattagcactgttaatccttacactataatggagtcttcaatttataaagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||| |
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| T |
33777802 |
tgaacacaacccttttatctatagaccaaaatggatttggtggaaccaaaattagcactgttaatccttacactataatggaaacatcgatctataaagc |
33777703 |
T |
|
| Q |
401 |
agttgctgatgcttttgtgaaagcattaaatgtttctactgttgaacctgtagcaccatttggaacatgttttgcaagtcaaagtattagttcttcaaga |
500 |
Q |
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| T |
33777702 |
tgttgctgatgcttttgtgaaagcattaaatgtttctactgttgaacctgtagcaccatttggaacatgttttgcaagtcaaagtattagttcttcaaga |
33777603 |
T |
|
| Q |
501 |
atgggaccagatgttccttctattgatctagtcttgcagaatgagaatgtggtttggaatatt |
563 |
Q |
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| T |
33777602 |
atgggaccagatgttccttccattgatctagtgttgcagaatgagaatgtggtttggaatatt |
33777540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 116 - 477
Target Start/End: Complemental strand, 33767651 - 33767293
Alignment:
| Q |
116 |
aaatggtgtacttttctttggtgatggaccttatctattcaactttgatgaatctaaaaatcttatttacacacctcttattacaaaccctgttagcact |
215 |
Q |
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|||||||| |||| || ||||||| |||||||| || |||||||||||||||||| |||||||| |||||| || | |||||||||||||||||| |
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| T |
33767651 |
aaatggtgcacttctcattggtgactgaccttataatttgaactttgatgaatctaaagttcttatttttacaccttttttaacaaaccctgttagcact |
33767552 |
T |
|
| Q |
216 |
tctccaagttctttcttaggtgaaaaatcagttgagtatttcattggtgtgaaatctattagagtttctggtaaaaatgtaaagttgaacacaacccttt |
315 |
Q |
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| T |
33767551 |
ac---aagttatttcttaggtgaaaaaacagttgagtatatcattggtatgaaatctattagagtttctgataaaaatgtaaaattgagcacaacccttt |
33767455 |
T |
|
| Q |
316 |
tatctatagaccaaaatggatttggtggaaccaaaattagcactgttaatccttacactataatggagtcttcaatttataaagcagttgctgatgcttt |
415 |
Q |
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|||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||||||| ||| | |||||| |
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| T |
33767454 |
tatctatacacaaaaatggatttggtggaaccaaaattagcccttttaatccttacactataatggagacgtcaatcaataaagctgttagttgtgcttt |
33767355 |
T |
|
| Q |
416 |
tgtgaaagcattaaatgtttctactgttgaacctgtagcaccatttggaacatgttttgcaa |
477 |
Q |
| |
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||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
33767354 |
tgtgatagcattcggagtttctgatgttcaacctgtagcaccatttggaacatgttttgcaa |
33767293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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