View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19150_low_4 (Length: 454)
Name: NF19150_low_4
Description: NF19150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19150_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 166 - 438
Target Start/End: Complemental strand, 25188793 - 25188525
Alignment:
| Q |
166 |
aaaggtatgatgttcatgatctatctttgatattttaaatatgttacaacttgtatctatgaatttagttatcgtgttaaattcgaacatgtaaaaatta |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
25188793 |
aaaggtatgatgttcatgatctatctttgatattttaaatatgttataacttgtatctatgaatttagatatcgtgttaaattccaacatgtaaaaatta |
25188694 |
T |
|
| Q |
266 |
aactttaaactacatgctataattttgacaccatgcaatgacctaac-nnnnnnnnnctttctataagatctacaccagaagaattatgaagaccaaatt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25188693 |
aactttaaactacatgctataattttgataccatgcaattacctaactttattttttttttctataagatctacaccagaagaattatgaagaccaaatt |
25188594 |
T |
|
| Q |
365 |
tagttgaatataatgcatagaataaggaaagaataaagtatgaaaatgtgtgtgtgttagagagaggcataata |
438 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25188593 |
tagttg-----aatgcatagaataaggaaagaataaagtatgaaaatgtgtgtgtgtaagagagaggcataata |
25188525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 25190182 - 25189945
Alignment:
| Q |
9 |
attatactcaatgaaaggtccctcttctttaactgtaattagctatttaatcattatctcatttaaacaattaatagtgtttttgaaaccctaaacgtcc |
108 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25190182 |
attatattcaatgaaaggtctctcttctttaactataattaactatttaatcgttatctcatttaaacaattaatagtgtgtttgaaaccctaaacgtcc |
25190083 |
T |
|
| Q |
109 |
gtgatgatagtcatactctcatacttactctcgatcactgactatctctaaaatctaaaaggtatgatgttcatgatctatctttgatattttaaatatg |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
25190082 |
atgatgatagtcatagtctcatacttactctcgatcactggtaatctctaaaatctaaaaggtatgatgttcatgatctatctttgatattgtaagcatt |
25189983 |
T |
|
| Q |
209 |
ttacaacttgtatctatgaatttagttatcgtgttaaa |
246 |
Q |
| |
|
|| ||||| ||| ||||||||| |||||| ||||||| |
|
|
| T |
25189982 |
ctataacttttatatatgaatttggttatcatgttaaa |
25189945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University