View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19150_low_7 (Length: 262)
Name: NF19150_low_7
Description: NF19150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19150_low_7 |
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| [»] chr7 (6 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30120108 - 30120369
Alignment:
| Q |
1 |
aacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaactttgttggaaggacgattagtattaattaccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30120108 |
aacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaactttgttggaaggacgattagtattaattaccata |
30120207 |
T |
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| Q |
101 |
taaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30120208 |
taaggtaaatgaaaaccaacctcaacttgtttccacttattagttctcaatgagaaaatctccaaggtaatcaaaccagatacccgatcatagtcattat |
30120307 |
T |
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| Q |
201 |
agcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagcca |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30120308 |
agcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagcca |
30120369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 30131210 - 30131372
Alignment:
| Q |
100 |
ataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcatta |
199 |
Q |
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|||||| |||||| || |||||| || |||||| || ||| |||||||||||||||||||| ||||| || ||||||||| |||||||||| ||| | |
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| T |
30131210 |
ataaggcaaatgagaagcaacctgaatttgttttcagctaatagctctcaatgagaaaatccccaagtcaagtgaactagatatccgatcatagccatca |
30131309 |
T |
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| Q |
200 |
tagcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagcca |
262 |
Q |
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| T |
30131310 |
tcgcattcataggaccctaaaactaccaagtaatcatcagttgatggttcatatgccaagcca |
30131372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 28180503 - 28180624
Alignment:
| Q |
128 |
tgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcattata---gcatttataggaccctaaaacta |
224 |
Q |
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||||||||| ||||||||||||||||||||||||| || ||| ||||||||||| ||||| || ||| || ||||||||||||||||||||||| |
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| T |
28180503 |
tgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagataccggatcaaagccatcatcaccgcatttataggaccctaaaacta |
28180602 |
T |
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| Q |
225 |
ccaagtaatcatcagttgacgg |
246 |
Q |
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|||||||||||||||||||||| |
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| T |
28180603 |
ccaagtaatcatcagttgacgg |
28180624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 30125162 - 30125220
Alignment:
| Q |
9 |
tgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaact |
67 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
30125162 |
tgttggtctcatgattatgaaccagccaatgaatagtcccattcaagaacaacccaact |
30125220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 30131121 - 30131170
Alignment:
| Q |
14 |
gtctcatgattatgaaccacccaatgaatagccccattcaagaacaaccc |
63 |
Q |
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||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
30131121 |
gtctcataattataaaccagccaatgaatagccccattcaagaacaaccc |
30131170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28180376 - 28180436
Alignment:
| Q |
1 |
aacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaac |
61 |
Q |
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||||||| | |||||||||||||||||||||| ||||||||||||||| || |||| |||| |
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| T |
28180376 |
aacattcctcttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaac |
28180436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 70 - 262
Target Start/End: Complemental strand, 29261459 - 29261267
Alignment:
| Q |
70 |
gttggaaggacgattagtattaattaccatataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggta |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||| | |
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| T |
29261459 |
gttggaaggacgattagtattaattaccatataaggtaaatgaaaaccaacatcaacttgtttctacttattagctctcaatgagaaaatatccaaggga |
29261360 |
T |
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| Q |
170 |
atcaaactagatacccgatcatagtcattatagcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagcca |
262 |
Q |
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| T |
29261359 |
atcaatctagatacccgatcatagtcattatagcatttataggaccttaaaactacgaagtaatcatcagttgacggttcatatgcaaagcca |
29261267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 1971 - 2121
Alignment:
| Q |
101 |
taaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcattat |
200 |
Q |
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||||| ||| || |||||| ||||| |||||||||| ||||||||||||||||||||||||||||| | | |||| |||| || | ||| || || |
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| T |
1971 |
taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtcagttaaaccagattcc---aaaaagttatcat |
2067 |
T |
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| Q |
201 |
agcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatg |
254 |
Q |
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| ||| ||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
2068 |
cgtattggtagtaccccaaaactaccaagtaatcatcagttgacggttcatatg |
2121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 21430244 - 21430104
Alignment:
| Q |
100 |
ataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcatta |
199 |
Q |
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|||||| |||||| || ||||||||| || |||||| |||||||||||||||||||||||| ||| ||| ||||||||||| ||| ||| |||| |
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| T |
21430244 |
ataaggcaaatgagaagcaacctcaattt-tttccattgattagctctcaatgagaaaatctctaagtcaattgaactagataccgactcagagtgatta |
21430146 |
T |
|
| Q |
200 |
tagcatttataggaccctaaaactaccaagtaatcatcagtt |
241 |
Q |
| |
|
| | ||| |||||| | |||||||||||||||||||||||| |
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| T |
21430145 |
ttgaattcgtaggactcgaaaactaccaagtaatcatcagtt |
21430104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 21426551 - 21426483
Alignment:
| Q |
98 |
atataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaag |
166 |
Q |
| |
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|||||||| |||||| || ||||||||| ||||||||| ||| |||||||||||||||||||| |||| |
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| T |
21426551 |
atataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaag |
21426483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 21426639 - 21426586
Alignment:
| Q |
10 |
gttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaaccc |
63 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
21426639 |
gttggtctcagaattatgaaccagccaatgaatagccccatttaagaacgaccc |
21426586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 43165016 - 43165061
Alignment:
| Q |
139 |
attagctctcaatgagaaaatctccaaggtaatcaaactagatacc |
184 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
43165016 |
attagctctcaatgagaaaatctccaagtcaatcgaactagatacc |
43165061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 45366194 - 45366222
Alignment:
| Q |
138 |
tattagctctcaatgagaaaatctccaag |
166 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45366194 |
tattagctctcaatgagaaaatctccaag |
45366222 |
T |
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