View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19150_low_8 (Length: 240)

Name: NF19150_low_8
Description: NF19150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19150_low_8
NF19150_low_8
[»] chr7 (2 HSPs)
chr7 (1-223)||(30120362-30120584)
chr7 (55-199)||(30124057-30124202)
[»] chr5 (2 HSPs)
chr5 (1-223)||(29261052-29261274)
chr5 (75-115)||(29688021-29688061)
[»] chr4 (9 HSPs)
chr4 (74-115)||(48852573-48852614)
chr4 (73-117)||(48875754-48875798)
chr4 (74-117)||(48870450-48870493)
chr4 (74-117)||(48886136-48886179)
chr4 (74-112)||(48898632-48898670)
chr4 (74-119)||(45372193-45372238)
chr4 (74-115)||(49044320-49044361)
chr4 (74-111)||(50672412-50672449)
chr4 (74-118)||(48170704-48170748)
[»] chr8 (1 HSPs)
chr8 (74-148)||(43165169-43165243)
[»] chr3 (1 HSPs)
chr3 (74-111)||(47452031-47452068)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30120362 - 30120584
Alignment:
Q  1 caaagccatacaaaaaccttaaaatatcgcgattgagaatattaagcttgattccaatagtcataggtgacctaggtatttgtttgtggactccggtgga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30120362 caaagccatacaaaaaccttaaaatattgcgattgagaatattaagcttgattccaatagtcataggtgacctaggtatttgtttgtggactccggtgga 30120461  T
Q  101 tggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccccctgcatgaacctccgatttgaggatgttgttggtgatccataaaatcaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  30120462 tggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccccctgcatgaacctccgatttgtggatgttgttggtgatccataaaatcaatt 30120561  T
Q  201 atgggtggaacataagcagaatc 223  Q
    |||||||||||||||||||||||    
T  30120562 atgggtggaacataagcagaatc 30120584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 30124057 - 30124202
Alignment:
Q  55 caatagtcataggtgacctaggtatttgtttgtggactccggtggatggattccatagatagaagcctttgtcagagtgc-aaaaacacaaaccccctgc 153  Q
    ||||||| ||||  |||||||||||||| | || |||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||| |    
T  30124057 caatagttatagaagacctaggtatttgctggtagactccggtggatggattccataactagaagcctttgtcagactgcaaaaaacacaaaccccctac 30124156  T
Q  154 atgaacctccgatttgaggatgttgttggtgatccataaaatcaag 199  Q
    | |||||||||||||||||| | | |||||||  ||||||||||||    
T  30124157 acgaacctccgatttgaggacgatattggtgacgcataaaatcaag 30124202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29261274 - 29261052
Alignment:
Q  1 caaagccatacaaaaaccttaaaatatcgcgattgagaatattaagcttgattccaatagtcataggtgacctaggtatttgtttgtggactccggtgga 100  Q
    |||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  29261274 caaagccatagaaaaaccttaaaatattgtgattgagaatattaagcttgattccaatagtcataggtgatctaggtatttgtttgtggactccggttga 29261175  T
Q  101 tggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccccctgcatgaacctccgatttgaggatgttgttggtgatccataaaatcaagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29261174 tggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccctctgcatgaacctccgatttgaggatgttgttggtgatccataaaatcaagt 29261075  T
Q  201 atgggtggaacataagcagaatc 223  Q
    |||||||||||||||||||||||    
T  29261074 atgggtggaacataagcagaatc 29261052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 29688061 - 29688021
Alignment:
Q  75 ggtatttgtttgtggactccggtggatggattccatagata 115  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  29688061 ggtatttgtctgtgaactccggtggatggattccatagata 29688021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 48852614 - 48852573
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagata 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  48852614 aggtatttgtttgtgaactccggtggatggattccatagata 48852573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 48875798 - 48875754
Alignment:
Q  73 taggtatttgtttgtggactccggtggatggattccatagataga 117  Q
    |||||||||||||||| | ||||||||||||||||||||| ||||    
T  48875798 taggtatttgtttgtgaaatccggtggatggattccataggtaga 48875754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 48870493 - 48870450
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagataga 117  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||    
T  48870493 aggtatttgtttgtgaaatccggtggatggattccataggtaga 48870450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 48886179 - 48886136
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagataga 117  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||    
T  48886179 aggtatttgtttgtgaaatccggtggatggattccataggtaga 48886136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 48898670 - 48898632
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatag 112  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  48898670 aggtatttgtttgtgagctccggtggatggattccatag 48898632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 45372193 - 45372238
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagatagaag 119  Q
    |||||||||||| || || || ||||||||||||||||||||||||    
T  45372193 aggtatttgtttctgaacaccagtggatggattccatagatagaag 45372238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 49044320 - 49044361
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagata 115  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  49044320 aggtatttgtttgtgaactctagtggatggattccatagata 49044361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 50672449 - 50672412
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccata 111  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  50672449 aggtatttgtttgtgaactcctgtggatggattccata 50672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 48170704 - 48170748
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagatagaa 118  Q
    |||||||||||| || |||| |||||||||||||||||| |||||    
T  48170704 aggtatttgtttatgaactcgggtggatggattccataggtagaa 48170748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 43165169 - 43165243
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccc 148  Q
    |||||||||||||||||  || ||||||||||||||||  |||||| || ||| |||||  ||||||| ||||||    
T  43165169 aggtatttgtttgtggatgcctgtggatggattccatatgtagaagtctctgtaagagtttaaaaacagaaaccc 43165243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 47452031 - 47452068
Alignment:
Q  74 aggtatttgtttgtggactccggtggatggattccata 111  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  47452031 aggtatttgtttgtgaactccagtggatggattccata 47452068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University