View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19150_low_9 (Length: 238)
Name: NF19150_low_9
Description: NF19150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19150_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16647148 - 16646929
Alignment:
| Q |
1 |
ttttaactgttaaaatgctttcttacttgtagcagaagattaacaatatcatgtctatgaatgaccacaatcacggctcaacgcaacatttgagtaacaa |
100 |
Q |
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| T |
16647148 |
ttttaactgttaaaatgctttcttacttgtagcagaacattaacaatatcatgtctatgaatgaccacaatcaaggctcaacgcaacatttgagtaacaa |
16647049 |
T |
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| Q |
101 |
tagcaatggaactgcaagtagttcgtatgaatatgagaatggggattgtgagtttgaagatgaggtgcatgagcatgttttttaagaagatgtgaatgag |
200 |
Q |
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| T |
16647048 |
tagcaatggaactgcaagtagttcgtatgaatatgagaat-gggattgttagtttgaagatgaggtgcatgagcatgtttttgaagaagatatgaatgag |
16646950 |
T |
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| Q |
201 |
aatatgaatgaggatgaggat |
221 |
Q |
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| T |
16646949 |
aatatgaatgaggatgaggat |
16646929 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 40770605 - 40770553
Alignment:
| Q |
15 |
atgctttcttacttgtagcagaagattaacaatatcatgtctatgaatgacca |
67 |
Q |
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| T |
40770605 |
atgccttcttacttgtagaagaacatcaagaatatcatgtctatggatgacca |
40770553 |
T |
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