View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19151_high_1 (Length: 561)
Name: NF19151_high_1
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 225 - 543
Target Start/End: Complemental strand, 43200429 - 43200106
Alignment:
| Q |
225 |
gttgggagacctaaagtgatgattgtagtaaccttatccttagactaatttgtgaaggaattccacaattttttatgc----tacgctgttttaccctaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
43200429 |
gttgggagacctaaagtgatgattgtagtaaccttatccttagactaatttgtgaaggaattccactattttttatgcattgtatgctgttttaccctaa |
43200330 |
T |
|
| Q |
321 |
nnnnnnnataaaataaacccttctatcgacattttagtgaacaaacgacatgatattt-gtaatatgtatgtaaagaattcttatatgctttatttggtt |
419 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
43200329 |
ttttcttatgaaataaacccttctatccgcattttagtgaacaaacgacatgacattttgtaatatgtatgcaaagaattcttatatgctatatttggtt |
43200230 |
T |
|
| Q |
420 |
atccaacacatgcatattctgcatccaaaacaagaggtttaaagtggatgaaacatgtatctgaacgtatacattcgaatcattatcattattaattaac |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43200229 |
atccaacacatgcatattctgcatccaaaacaagaggtttaaagtggatgaaacatgtatctggacgtatacattagaatcattatcattattaattaac |
43200130 |
T |
|
| Q |
520 |
aattgccatctcttaattcctatc |
543 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43200129 |
aattgccatctcttaattcctatc |
43200106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 43200652 - 43200490
Alignment:
| Q |
16 |
atgcgcataatcagaagtatcttcaaaattaaaagatgctcaacctcgttcttcaaagtaaatgaaaac--------------ggcagtttggtgtgcat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43200652 |
atgcgcataatcagaagtatcttcaaaattaaaagatgctcaacctcgttcttcaaagtaaatgaaaacggcaatttaaaaaaggcagtttggtgtgcat |
43200553 |
T |
|
| Q |
102 |
gtaggggtctggaatagggttggcctaatatatgagatttaaaacaaattttaatatatgaga |
164 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
43200552 |
gtaggggtctggaataggattggcctaatatacgagatttaaaataaattttaatatatgaga |
43200490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University