View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_high_12 (Length: 234)
Name: NF19151_high_12
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 40881559 - 40881353
Alignment:
| Q |
12 |
aagaatattacaaaaattaagtcacataatttatggttatctcaaagcttaaagcatttggtggaataagaaagcattttacctaattcgaaacggctgg |
111 |
Q |
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| T |
40881559 |
aagaatattacaaaaattaagtcacattatttatggttatctcaaagcttaaagcatttggtggaataagaaagcattttacctaattcgaaacggctgg |
40881460 |
T |
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| Q |
112 |
aaactaaatcgactccaatgattcttgatgcaccagatatccttgctccttcagcagcctgaaatttgtattattgaatctttttagttgctgctatata |
211 |
Q |
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| T |
40881459 |
aaactaaatcgactccaatgattcttgatgcaccagatatccttgctccttcagcagcctgaaatttgtattattgaatctttttagttgctgctatata |
40881360 |
T |
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| Q |
212 |
tgataac |
218 |
Q |
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||||||| |
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| T |
40881359 |
tgataac |
40881353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 40900184 - 40900076
Alignment:
| Q |
63 |
aagcatttggtggaataagaaagcattttacctaattcgaaacggctggaaactaaatcgactccaatgattcttgatgcaccagatatccttgctcctt |
162 |
Q |
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||||||||| ||||||||||||||| | |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
40900184 |
aagcatttgatggaataagaaagcactgtacctaattcaaatcggctggaaactaaatcaactccaatgattcttgatgcaccagatatcctggctcctt |
40900085 |
T |
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| Q |
163 |
cagcagcct |
171 |
Q |
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| T |
40900084 |
cagcagcct |
40900076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 40904723 - 40904610
Alignment:
| Q |
59 |
cttaaagcatttggtggaataagaaa-gcattttacctaattcgaaacggctggaaactaaatcgactccaatgattcttgatgcaccagatatccttgc |
157 |
Q |
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||||||||||||| |||||||||||| ||||| |||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
40904723 |
cttaaagcatttgatggaataagaaaagcattgtacctaattcaaatcggctggaaactaaatcaaccccaatgattcttgatgcaccagaaatccttgc |
40904624 |
T |
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| Q |
158 |
tccttcagcagcct |
171 |
Q |
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||||||||||||| |
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| T |
40904623 |
cccttcagcagcct |
40904610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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