View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_high_6 (Length: 386)
Name: NF19151_high_6
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 35882224 - 35881863
Alignment:
| Q |
10 |
cagaagggaaattaccggttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagct |
109 |
Q |
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| T |
35882224 |
cagaagggaaattaccagttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagct |
35882125 |
T |
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| Q |
110 |
tgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882124 |
tgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaag |
35882025 |
T |
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| Q |
210 |
ctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccga |
309 |
Q |
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| T |
35882024 |
ctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccga |
35881925 |
T |
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| Q |
310 |
atttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaaaaccagcttggt |
371 |
Q |
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| T |
35881924 |
atttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaaaaccagcttggt |
35881863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 24456425 - 24456064
Alignment:
| Q |
10 |
cagaagggaaattaccggttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagct |
109 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456425 |
cagaagggaaattaccagttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagct |
24456326 |
T |
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| Q |
110 |
tgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456325 |
tgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaag |
24456226 |
T |
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| Q |
210 |
ctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456225 |
ctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccga |
24456126 |
T |
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| Q |
310 |
atttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaaaaccagcttggt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456125 |
atttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaaaaccagcttggt |
24456064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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