View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_high_8 (Length: 260)
Name: NF19151_high_8
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 47081102 - 47080852
Alignment:
| Q |
1 |
caacttcaatctaccgtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaataatagctctcgtgtggtaat |
100 |
Q |
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| T |
47081102 |
caacttcaatctaccgtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaacaatagctctcgtgtggtaat |
47081003 |
T |
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| Q |
101 |
gctgtggaaagcacttaatgagacatgtttagtgaaggggttttgtgggttgaacagtta-tgcacttccaacatcagcagtgatgctgtctgcaagtgt |
199 |
Q |
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| T |
47081002 |
gttgtggaaagcacttaatgagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctgcaagtgt |
47080903 |
T |
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| Q |
200 |
tatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatg |
250 |
Q |
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| T |
47080902 |
tatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatg |
47080852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47060655 - 47060875
Alignment:
| Q |
1 |
caacttcaatctaccgtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaataatagctctcgtgtggtaat |
100 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||| |||| |||||||| ||||||||||| |
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| T |
47060655 |
caacttcaatctaccgtgcaacgtttgatgtagatggaaacttgagattgtatgagcaccaatttgactttgagagcaagaatagctcgcgtgtggtaat |
47060754 |
T |
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| Q |
101 |
gctgtggaaagcacttaatgagacatgtttagtgaaggggttttgtgggttgaacagtta-tgcacttccaacatcagcagtgatgctgtctgcaagtgt |
199 |
Q |
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| T |
47060755 |
cttgtggcaagcacttaatgacacttgtcaagtgaaggggttttgtgggttgaacagttattgctccttcaatatgagcggtgatgctgtatgcaaatgt |
47060854 |
T |
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| Q |
200 |
tatcctggtttcatcctttcc |
220 |
Q |
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| T |
47060855 |
tatcctggtttcatcccttcc |
47060875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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