View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_1 (Length: 624)
Name: NF19151_low_1
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 12649446 - 12649208
Alignment:
| Q |
11 |
caaaggctcaatgaagaatatttcatttaaatgagtgagccaaataatgttatgaaaagagtaataaacaatagaaatgattttcattgtcaaccaatat |
110 |
Q |
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| T |
12649446 |
caaaggctcaatgaagaatatttcatttaaatgagtgagccaaataatgttatgaaatgagcaataaacaatagaaatgattttcattgtcaaccaatat |
12649347 |
T |
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| Q |
111 |
tcaagaccttgattagtgataaaattctaaaaggaactaatagtgagagtcatattgaacttgactctcaggatttaaaacaaactaagatcgtactacc |
210 |
Q |
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| T |
12649346 |
tcaagaccctgattagtgataaaattctaaaaggaactaacagtgagagtcatattgaacttgactctcaggatttaaaacaaactaagattgtactacc |
12649247 |
T |
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| Q |
211 |
cattttccattgaaagcatgattgcaatcaactacttta |
249 |
Q |
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| T |
12649246 |
cattttccattgaaagcatgattgcaatcaactacttta |
12649208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 446 - 610
Target Start/End: Complemental strand, 12649214 - 12649052
Alignment:
| Q |
446 |
tactttagtctatgtagttgcgaattaagatatacataaacctttccacaagtccacaattaaagatattcattgtacaaggtacagacacatgtgttaa |
545 |
Q |
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| T |
12649214 |
tactttagtctatgtaattgcaaattaagatatacataaacctttccacaagtccacagttaaagatgttcattgtacaaggtacatacaca--tgttaa |
12649117 |
T |
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| Q |
546 |
atgcaaaccttaattctatcaaaagacnnnnnnngttacatttatagtattaggatagagccatg |
610 |
Q |
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| T |
12649116 |
atgcaaaccttaattctatcaaaagacaaaaaaagttacatttatagtattaggatagagccatg |
12649052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 310 - 445
Target Start/End: Complemental strand, 1644246 - 1644111
Alignment:
| Q |
310 |
ttatatacactttacataagccagctcagcataactgtctaactaaccaaatgtaatacaaatgcaaaagaaattatatacaaatgaagttaggttttat |
409 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1644246 |
ttatatacactttacgtaagtcagctcagcataactgtctaactaacccaatgtaatacaaatgcaaatgaaattatatacaaatgaagttaggttttat |
1644147 |
T |
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| Q |
410 |
gctttgtttcatccacttttccttcatgtgctgata |
445 |
Q |
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| T |
1644146 |
gctttgtttcatccacttttccttcatgtgctgata |
1644111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 1644346 - 1644281
Alignment:
| Q |
248 |
taaaagttgaaataactgccatgaaagagaaagtgaaaaagctccaattggagaaaagtgtattat |
313 |
Q |
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| T |
1644346 |
taaaagttgaaataactgccatgaaagagaaagtgaaaaagctccaattggagaaaagtgtattat |
1644281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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