View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19151_low_15 (Length: 232)

Name: NF19151_low_15
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19151_low_15
NF19151_low_15
[»] chr1 (1 HSPs)
chr1 (7-213)||(44811992-44812198)
[»] chr6 (8 HSPs)
chr6 (46-150)||(11673513-11673617)
chr6 (40-143)||(11663446-11663549)
chr6 (40-146)||(11710041-11710147)
chr6 (82-140)||(11739337-11739395)
chr6 (85-141)||(11631501-11631557)
chr6 (82-140)||(11756312-11756370)
chr6 (82-140)||(12093565-12093623)
chr6 (70-146)||(11618660-11618736)
[»] scaffold0019 (1 HSPs)
scaffold0019 (70-141)||(8450-8521)
[»] scaffold0196 (1 HSPs)
scaffold0196 (32-146)||(12974-13088)
[»] chr4 (2 HSPs)
chr4 (82-141)||(31291060-31291119)
chr4 (82-141)||(27957864-27957923)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 44811992 - 44812198
Alignment:
Q  7 tgggtagataatactgtatctaagtcaacattgagaaatataaatttggaagttaaatctggacaaaaggtcgcgatttgtggagaagttggctcaggca 106  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44811992 tgggaagataataatgtatctaagtcaacattgagaaatataaatttggaagttaaatctggacaaaaggtcgcgatttgtggagaagttggctcaggca 44812091  T
Q  107 aatcaactctcttatcagcaattcttggagaagttcctaacacacgagggaaagtaagattttgttcctttttatttaaaaaacctttgacatacagaag 206  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44812092 aatcatctctcttatcagcaattcttggagaagttcctaacacacgagggaaagtaagattttgatcctttttatttaaaaaacctttgacatacagaag 44812191  T
Q  207 ttctata 213  Q
    |||||||    
T  44812192 ttctata 44812198  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 11673617 - 11673513
Alignment:
Q  46 ataaatttggaagttaaatctggacaaaaggtcgcgatttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagttccta 145  Q
    ||||||||||| ||||||  |||||||| ||| || |||||||| |||||||||||||| ||||||||  ||||| || |||||||||||||| || |||    
T  11673617 ataaatttggacgttaaacatggacaaagggtggctatttgtggcgaagttggctcaggaaaatcaaccatcttagcaacaattcttggagaaatttcta 11673518  T
Q  146 acaca 150  Q
    |||||    
T  11673517 acaca 11673513  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 11663446 - 11663549
Alignment:
Q  40 agaaatataaatttggaagttaaatctggacaaaaggtcgcgatttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaag 139  Q
    ||||| ||||||||||| |||| |  ||| |||||||| || || |||||||||||||||||||| |||||||| |||||| || ||||||| |||||||    
T  11663446 agaaacataaatttggacgttagacgtgggcaaaaggtggctatctgtggagaagttggctcaggaaaatcaaccctcttagcaacaattctcggagaag 11663545  T
Q  140 ttcc 143  Q
    ||||    
T  11663546 ttcc 11663549  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 11710147 - 11710041
Alignment:
Q  40 agaaatataaatttggaagttaaatctggacaaaaggtcgcgatttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaag 139  Q
    ||||| ||||| ||||| |||| |  ||| |||||||| || ||||||||||||||||||||||| ||||||||  | ||| || ||||||||||||| |    
T  11710147 agaaacataaacttggatgttagacgtgggcaaaaggtggctatttgtggagaagttggctcaggaaaatcaacggtattagcaacaattcttggagagg 11710048  T
Q  140 ttcctaa 146  Q
    |||||||    
T  11710047 ttcctaa 11710041  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 11739395 - 11739337
Alignment:
Q  82 atttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagt 140  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  11739395 atttgtggagaagttggctcaggtaaatcaactctcttagcagcgattctcggagaagt 11739337  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 11631557 - 11631501
Alignment:
Q  85 tgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagtt 141  Q
    ||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||    
T  11631557 tgtggagaagttggctccggcaaatcaaccctcttagcaacaattcttggagaagtt 11631501  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 11756312 - 11756370
Alignment:
Q  82 atttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagt 140  Q
    ||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||||||||    
T  11756312 atttgtggagaagttggctcaggaaaatcaactttattagcagcaattctcggagaagt 11756370  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 12093623 - 12093565
Alignment:
Q  82 atttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagt 140  Q
    ||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||||||||    
T  12093623 atttgtggagaagttggctcaggaaaatcaactttattagcagcaattctcggagaagt 12093565  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 11618660 - 11618736
Alignment:
Q  70 caaaaggtcgcgatttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagttcctaa 146  Q
    |||||||| || ||||||||||||||||| || || ||||||||  ||||| || ||||||||||||||||| ||||    
T  11618660 caaaaggtggccatttgtggagaagttggttccggaaaatcaaccatcttagcaacaattcttggagaagtttctaa 11618736  T

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Target: scaffold0019 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 8521 - 8450
Alignment:
Q  70 caaaaggtcgcgatttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagtt 141  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||| |  || |||||||||||||||||    
T  8521 caaaaggtggctatttgtggagaagttggctcaggaaaatcaactctcattgcaacaattcttggagaagtt 8450  T

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Target: scaffold0196 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 12974 - 13088
Alignment:
Q  32 caacattgagaaatataaatttggaagttaaatctggacaaaaggtcgcgatttgtggagaagttggctcaggcaaatcaactctcttatcagcaattct 131  Q
    |||||||||| | ||||||||| || |||| |  ||| |||||||| || || || ||| |||||||||| ||||||||||| || ||| || |||||||    
T  12974 caacattgaggagtataaattttgaggttagacatggccaaaaggtggctatctgcggaaaagttggctctggcaaatcaacccttttagcaacaattct 13073  T
Q  132 tggagaagttcctaa 146  Q
    |||||||||||||||    
T  13074 tggagaagttcctaa 13088  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 31291119 - 31291060
Alignment:
Q  82 atttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagtt 141  Q
    ||||||||||||||||||||||| |||||||| || ||| || |||||||||||||||||    
T  31291119 atttgtggagaagttggctcaggaaaatcaacactattaacaacaattcttggagaagtt 31291060  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 27957923 - 27957864
Alignment:
Q  82 atttgtggagaagttggctcaggcaaatcaactctcttatcagcaattcttggagaagtt 141  Q
    |||||||||||||||| |||||| |||| ||| || ||| || |||||||||||||||||    
T  27957923 atttgtggagaagttgtctcaggaaaattaacgctattagcaacaattcttggagaagtt 27957864  T

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