View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_3 (Length: 548)
Name: NF19151_low_3
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Complemental strand, 30357309 - 30356787
Alignment:
| Q |
19 |
tgctcctgtttgaagaaaaaataatatcattccttgctttagaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagt |
118 |
Q |
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| T |
30357309 |
tgctcctgtttgaagaaaaaataatatcattccttgctttagaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagt |
30357210 |
T |
|
| Q |
119 |
tcccgcaagcccattcaaacattgtaaacatgttatgaggaattatcaacacacattgcttatttcttagtatgatggctaggttctaagaaatttgtga |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30357209 |
tcccgcaaccccattcaaacattgtaaacatgttatgaggaattatcaacacacattgcttatttcttagtatgatggctaggttctaagaaatttgtga |
30357110 |
T |
|
| Q |
219 |
gtgtaagtcttgaccctgggtggaatatgacatttgatatctcctacaaatatgcaagtataactcccttaaatagttacggagcaatacggcattctga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
30357109 |
gtgtaagtcttgaccctgggtggaatatgacatttgatatctcctacaaatatgcaagtataactcccttaaatagttacggagcaatatgacattctga |
30357010 |
T |
|
| Q |
319 |
aattagttacttgtggaagtaaaagtccacggaaaattggtatggagaaatacgacgttagaaaaatctagaaacttaagggtaaagaggatggcaaaga |
418 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
30357009 |
aattagttacttgtggaagtaaaagtccacggcaaattggtatggagaaatacgacgttagaaaagtctagaaacttaggggtaaagaggatggcaaaga |
30356910 |
T |
|
| Q |
419 |
gagtacaatacaagtgagaatacaaaaaatcatcaagcccaaaaagaaaactaaaagtcatccaccaatgatatttagacaccccaatatttcattgaac |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
30356909 |
gagtacaatacaagtgagaatacaaaaaatcatcaagcccaaaaagaaaactaaaagtcatccaccaatgatatttaaacaccccaata-ttcattgaac |
30356811 |
T |
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| Q |
519 |
attttattttctctctaggtctct |
542 |
Q |
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| T |
30356810 |
attttattttctctctaggtctct |
30356787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 333
Target Start/End: Complemental strand, 30354835 - 30354556
Alignment:
| Q |
60 |
gaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagttcccgcaagcccattcaaacattgtaaacatgttatgagga |
159 |
Q |
| |
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|||||||| |||| | ||| ||||| ||||| |||||||||| || |||||||||||| | || |||||||||||||||| ||||||||||||||| |
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| T |
30354835 |
gaaataagacataccccaatgaaccagacaaacgaaaatcccttcctttgtttcttagttctcataaccccattcaaacattgtgaacatgttatgagga |
30354736 |
T |
|
| Q |
160 |
attatc--aaca--cacattgcttatttcttagtatgatggctaggttctaagaaattt--gtgagtgtaagtcttgaccctgggtggaatatgacattt |
253 |
Q |
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||||| |||| || || |||| ||||||||||| ||| || || | ||||||| | ||||||||||||||||||||| | |||| ||||| | |
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| T |
30354735 |
tttatcagaacatgcatgtttcttagttcttagtatgttggttaagtccaaagaaatatgcgtgagtgtaagtcttgacccttgcaacaatacgacatgt |
30354636 |
T |
|
| Q |
254 |
gatatctcctacaaatatgcaagtataactcccttaaatagttacggagcaatacggcattctgaaattagttacttgtg |
333 |
Q |
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|| ||||||||| | || || |||| |||||||||||||| ||||||| || ||||||||| ||| |||| |||| |
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| T |
30354635 |
gacgtctcctacatctttgtgagcataagtcccttaaatagttttggagcaacaccacattctgaagttaattacatgtg |
30354556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 30370849 - 30370659
Alignment:
| Q |
109 |
gtttcttagttcccgcaagcccattcaaacattgtaaacatgttatgaggaattatcaacacacattgcttatttcttagtatgatggctaggttctaag |
208 |
Q |
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|||||||||||| || || |||||| ||||||||| |||||||||| | ||||| || ||| || |||| ||||| ||| ||||| ||||||||||| |
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| T |
30370849 |
gtttcttagttctcgaaaccccattaaaacattgtgaacatgttatatgcaattagcataacaagtttcttagttcttggtaagatggttaggttctaag |
30370750 |
T |
|
| Q |
209 |
aaatttgt--gagtgtaagtcttgaccctgggtggaatatgacatttgatatctcctacaaatatgcaagtataactcccttaaatagtta |
297 |
Q |
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| T |
30370749 |
agatctgtgcgagtgtaaatcctaaccttgagagcaatatgatatctgacgtctcctacttttgtgcgagtataactctcttaaatagtta |
30370659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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