View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_4 (Length: 547)
Name: NF19151_low_4
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 133 - 368
Target Start/End: Complemental strand, 1644346 - 1644111
Alignment:
| Q |
133 |
taaaagttgaaataactgccatgaaagagaaagtgaaaaagctccaattggagaaaagtgtattatgattcattcatctcagaatgtacatgagaaatgt |
232 |
Q |
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| T |
1644346 |
taaaagttgaaataactgccatgaaagagaaagtgaaaaagctccaattggagaaaagtgtattatgattcattcatctcagaatgtacatgagaaatgt |
1644247 |
T |
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| Q |
233 |
ttatatacaatttacataagccagctcagcataactgtctaactaaccaaatgtaatacaaatgcaaaagaaattatatacaaatgaagttaggttttat |
332 |
Q |
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| T |
1644246 |
ttatatacactttacgtaagtcagctcagcataactgtctaactaacccaatgtaatacaaatgcaaatgaaattatatacaaatgaagttaggttttat |
1644147 |
T |
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| Q |
333 |
gctttgtttcatccacttttccttcatgtgctgata |
368 |
Q |
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| T |
1644146 |
gctttgtttcatccacttttccttcatgtgctgata |
1644111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 369 - 533
Target Start/End: Complemental strand, 12649214 - 12649052
Alignment:
| Q |
369 |
tactttagtctatgtagttgcgaattaagatatacataaacctttccacaagtccacaattaaagatattcattgtacaaggtacagacacatgtgttaa |
468 |
Q |
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| T |
12649214 |
tactttagtctatgtaattgcaaattaagatatacataaacctttccacaagtccacagttaaagatgttcattgtacaaggtacatacaca--tgttaa |
12649117 |
T |
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| Q |
469 |
atgcaaaccttaattctatcaaaagacnnnnnnngttacatttatagtattaggatagagccatg |
533 |
Q |
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| T |
12649116 |
atgcaaaccttaattctatcaaaagacaaaaaaagttacatttatagtattaggatagagccatg |
12649052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 14232403 - 14232361
Alignment:
| Q |
91 |
caatggcggaagcagagcaagcttgaacttgctttgataccat |
133 |
Q |
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| T |
14232403 |
caattgcggaagcaaagcaagcttgaacttgctctgataccat |
14232361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 37174276 - 37174208
Alignment:
| Q |
96 |
gcggaagcagagcaagcttgaacttgctttgataccataaaagttgaaataactgccatgaaagagaaa |
164 |
Q |
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| T |
37174276 |
gcggaagcagagcaagtttgaacttgctctgataccataaaagtaaaagtaaccaccatggaagagaaa |
37174208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 22840895 - 22840853
Alignment:
| Q |
91 |
caatggcggaagcagagcaagcttgaacttgctttgataccat |
133 |
Q |
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| T |
22840895 |
caattgcggaagcagagcaagcttgaacttgctctgataccat |
22840853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 15526517 - 15526554
Alignment:
| Q |
96 |
gcggaagcagagcaagcttgaacttgctttgataccat |
133 |
Q |
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| T |
15526517 |
gcggaagcagagcaagcttgaacttgctctgataccat |
15526554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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