View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_5 (Length: 523)
Name: NF19151_low_5
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 37041214 - 37040910
Alignment:
| Q |
14 |
catcaccaacctaaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacctctgcccacaaaa |
113 |
Q |
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| T |
37041214 |
catcaccaacctaaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacttctgcccacaaaa |
37041115 |
T |
|
| Q |
114 |
catttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041114 |
catttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaata |
37041015 |
T |
|
| Q |
214 |
ttctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041014 |
ttctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacc |
37040915 |
T |
|
| Q |
314 |
tacac |
318 |
Q |
| |
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||||| |
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| T |
37040914 |
tacac |
37040910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 378 - 509
Target Start/End: Complemental strand, 37040848 - 37040717
Alignment:
| Q |
378 |
ccattagatatatttattttagctaaccccttgttcaagaccatcaatgagagcagaatgatcgcgccaagcgacgcgttgattgtaaggtaatctccct |
477 |
Q |
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| T |
37040848 |
ccattagatatatttattttagctaaccccttgttcaagaccatcaatgagagcagaatgatcgcgccaagcgacgcgttgattgtaaggtaatctccct |
37040749 |
T |
|
| Q |
478 |
gaacgttgcgcttcaaaataaaggaggctctt |
509 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37040748 |
gaacgttgcgcttcaaaataaaggaggctctt |
37040717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 97 - 315
Target Start/End: Original strand, 36272645 - 36272863
Alignment:
| Q |
97 |
tacctctgcccacaaaacatttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcacct |
196 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||| || | ||||||||| | |
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| T |
36272645 |
tacctctgcccacaacacatttgggctagtatgagctttgatgaaataatcagttccccatttaattgcttccattacatgaccaagttcaccagcttca |
36272744 |
T |
|
| Q |
197 |
tcaatttcttgcaaatattctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataatacc |
296 |
Q |
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||||||||||| | | || ||| ||| |||||| | |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
36272745 |
acaatttcttgcctaaactcaataacactccatgacaacattgtgacagtaaatgccattggtaaaccaaatttcacatgatcacctgcatcatagtacc |
36272844 |
T |
|
| Q |
297 |
ctcctaccaaatccaccta |
315 |
Q |
| |
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|||| |||||||| ||||| |
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| T |
36272845 |
ctccaaccaaatcaaccta |
36272863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 500
Target Start/End: Original strand, 36272967 - 36273064
Alignment:
| Q |
403 |
accccttgttcaagaccatcaatgagagcagaatgatcgcgccaagcgacgcgttgattgtaaggtaatctccctgaacgttgcgcttcaaaataaag |
500 |
Q |
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||||||||||| | |||||| | ||| ||||||||| |||||| || ||||| ||||| ||||| |||||||||||||| |||||||| ||||| |
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| T |
36272967 |
accccttgttctaaaccatctgtaagaccagaatgatgacgccaattcacacgttggttgtatggtaacctccctgaacgttgtgcttcaaagtaaag |
36273064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 41915381 - 41915316
Alignment:
| Q |
226 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcata |
291 |
Q |
| |
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|||||| | |||||| |||||||||||||||||||| |||||||| |||| ||| ||||||||||| |
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| T |
41915381 |
ccatgacatcattgtaacagtaaatgccattggtaacccaaatttcacattatcccctgcatcata |
41915316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 28582400 - 28582488
Alignment:
| Q |
218 |
atagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaa |
306 |
Q |
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||||| ||||||| ||||||||| ||| | | |||||||||| ||||| || |||||||||||||||||||| |||||||| ||||| |
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| T |
28582400 |
atagccccccatgcaagcattgtgacactgtaagccattggtagcccaaacttcacatgatcacctgcatcatagtaccctcccaccaa |
28582488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 39419553 - 39419644
Alignment:
| Q |
226 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacctaca |
317 |
Q |
| |
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|||||||||||| || |||||| ||||| || |||||||| || |||| ||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
39419553 |
ccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttgacattgtcaccagcatcataataccctccaaccaaatcaacctaca |
39419644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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