View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_6 (Length: 448)
Name: NF19151_low_6
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 36930680 - 36930266
Alignment:
| Q |
18 |
gttaatgttgttttccgtgattcagccatgcacgcattgaaggtccaggcatagcagctatcccattcttatgaaattattttgatgtgaaataatatgt |
117 |
Q |
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| T |
36930680 |
gttaatgttgttttccgtcattcagccatgcacgcattgaaggtccaggcatagcagctatcccattcttatgaaattattttgatgtgaaataatatgt |
36930581 |
T |
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| Q |
118 |
tattcgatttttatatgtattttgtttatggttgtcccacactacactacacagctgttttcctaaatgatatcgtagctatcccactctcatgtgtgtg |
217 |
Q |
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| T |
36930580 |
tattcgatttttatatgtatttagtttatggttgtcccacact-----acacagctgttttccttaatggtatcgtagctatcccactctcatgtgtgtg |
36930486 |
T |
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| Q |
218 |
ttcattctattccaaacatcatgatgcagaagcaatttgtcttg------------ggaatatttgcatatccaaacaaaaaagatggggttgggggcta |
305 |
Q |
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| T |
36930485 |
ttcattccattccaaacatcatgatgcagaagcaatttgtcttggctagtaaattaggaatatttgcagatccaaaaaaaaaa-----agatgggggcta |
36930391 |
T |
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| Q |
306 |
gcttttagaagaatttgacttgtcaatgcatgctgcactggcgtagcaatagctgga--acacccttaaagactttggatttaagtgattagagttaagt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| |
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| T |
36930390 |
gcttttagaagaatttgacttgtcaatgcatgctgcactggcgtagcaatagctggaacacacgctcaaagactttggatttaagtgattagagttaagt |
36930291 |
T |
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| Q |
404 |
tggatcaatcaatagttttgcttag |
428 |
Q |
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| T |
36930290 |
tgaatcaatcaatagttttgcttag |
36930266 |
T |
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