View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_8 (Length: 346)
Name: NF19151_low_8
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 1832089 - 1832273
Alignment:
| Q |
20 |
cccgttattaaaattaaccctcacatttccaggtattccctttatatttacatttgaaggtctcaagtttgatcccccaatgccaattttgtaggctaat |
119 |
Q |
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| T |
1832089 |
cccgttattaaaattaaccctcacatttccaggttttccctttatatttacgtttcaaggtctcaagtttgatccctcaatgccaattttgtgggctaat |
1832188 |
T |
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| Q |
120 |
ccatat--aaagttttaaacaaggccgtcgcacatggacggtagaattgaacctttagtatg-cattgaaccgatacctagtttt |
201 |
Q |
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| T |
1832189 |
ccatatagagagttttaaattaggccgtcgcacacggacggtggaattgaacctttagtatgtcattgaaccgataccaagtttt |
1832273 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 1866623 - 1866536
Alignment:
| Q |
252 |
tgacctgtgcagccattgggatgataaggatttccttcaaaacctgtattgcaactgcatcggtaaccaaaatctgtgtccttgtcat |
339 |
Q |
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| T |
1866623 |
tgacctgtgcagccattgggatgataaggatttccttcaaaaccttgattgcaatggcatcggtaaccaaaatatgtgtccttgtcat |
1866536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 1832324 - 1832413
Alignment:
| Q |
252 |
tgacctgtgcagccattgggatgataaggatttccttcaaaacctgtattgcaactgcat--cggtaaccaaaatctgtgtccttgtcat |
339 |
Q |
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| T |
1832324 |
tgacctgtgcagccattgggatgataaggatttccttcaaaaccttgattgcaatggcatcgcggtaaccaaaatatgtgtccttgtcat |
1832413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 1840696 - 1840606
Alignment:
| Q |
252 |
tgacctgtgcagcca---ttgggatgataaggatttccttcaaaacctgtattgcaactgcatcggtaaccaaaatctgtgtccttgtcat |
339 |
Q |
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| T |
1840696 |
tgacctgtgcagccaatattgggttcataaggatttccttcaaaaccttgattacaaatgcatcggtaaccaaaatctttatccttgtcat |
1840606 |
T |
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