View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19151_low_9 (Length: 327)
Name: NF19151_low_9
Description: NF19151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19151_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 28085626 - 28085927
Alignment:
| Q |
16 |
cattgttgtccaagtttcatccctaaaacgtaaaaatgaaattgcagatatagttaccagataccttcgggagaaacagatcacgattgtggtagtgctg |
115 |
Q |
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| T |
28085626 |
cattgttgtccaagtttcatccctaaaacgtaaaaatgaaattgcagatatagttaccagataccttcgggagaaacagatcatgattgtggtagtgctg |
28085725 |
T |
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| Q |
116 |
atatttggactggtgtgctgaacaatagtgatattttctgttctcctggatcatactgcccaactacaacacgtaaagtttcttgcgatcgtgggtattg |
215 |
Q |
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| T |
28085726 |
atatttggactggtgtgctgaacaatagtgatattttctgttctcctggatcatactgcccaactacaacacgtaaagtttcttgcgatcgtgggtattg |
28085825 |
T |
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| Q |
216 |
atttgtctcattcctccttttgctacagtctaaattgtctaaaattcttgtcaccagataatgttctccaaaactccattattacgcaatgctacttttc |
315 |
Q |
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| T |
28085826 |
atttgtctcattcctccttttgctacagtctaaattgtctaaaattcttgtcaccagataatgttctccaaaactccattattacgcaatgctacttttc |
28085925 |
T |
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| Q |
316 |
at |
317 |
Q |
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|| |
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| T |
28085926 |
at |
28085927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 41044530 - 41044378
Alignment:
| Q |
52 |
tgaaattgcagatatagttaccagataccttcgggagaaacagatcacgattgtggtagtgctgatatttggactggtgtgctgaacaatagtgatattt |
151 |
Q |
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| T |
41044530 |
tgaatttgcagttatagttaccaaattcctgcaggagaaacaaatcatacttgtggtagtgctgatatttggtctggtgttgtcaacaatagtaatatct |
41044431 |
T |
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| Q |
152 |
tctgttctcctggatcatactgcccaactacaacacgtaaagtttcttgcgat |
204 |
Q |
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| T |
41044430 |
tctgttctccaggatcatattgtccttctccaacgagcaaagtttcttgcgat |
41044378 |
T |
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