View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19152_high_11 (Length: 280)
Name: NF19152_high_11
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39132231 - 39131980
Alignment:
| Q |
1 |
gactctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132231 |
gactctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtac |
39132132 |
T |
|
| Q |
101 |
tcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
39132131 |
tcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaa |
39132032 |
T |
|
| Q |
201 |
actctccttccccttgattagcttcattcaatctctttattgctgcttgtct |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132031 |
actctccttccccttgattagcttcattcaatctctttattgctgcttgtct |
39131980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 21130506 - 21130750
Alignment:
| Q |
2 |
actctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtact |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||| |||||||| |||| | |||||||| |
|
|
| T |
21130506 |
actctagctgttcctaaagcaatatcataccttttagtccaatcaagtgtgttggttttggatgaaagattttccgctaaagaaccattttccatgtact |
21130605 |
T |
|
| Q |
102 |
catataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
21130606 |
catataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaaa |
21130705 |
T |
|
| Q |
202 |
ctctccttccccttgattagcttcattcaatctctttattgctgc |
246 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21130706 |
ctctccttctccttgtttagcttcattcaatctctttattgctgc |
21130750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 18658672 - 18658918
Alignment:
| Q |
6 |
tagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcata |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
18658672 |
tagctgttcctaaagcaatatcataccttttactccagtcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcata |
18658771 |
T |
|
| Q |
106 |
taccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactct |
205 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
18658772 |
taccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattct |
18658871 |
T |
|
| Q |
206 |
ccttccccttgattagcttcattcaatctctttattgctgcttgtct |
252 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
18658872 |
ccttctccttgtttagcttcatttaatctctttattgctgcatgtct |
18658918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 21111546 - 21111788
Alignment:
| Q |
2 |
actctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
21111546 |
actctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtact |
21111645 |
T |
|
| Q |
102 |
catataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
21111646 |
catataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaa |
21111745 |
T |
|
| Q |
202 |
ctctccttccccttgattagcttcattcaatctctttattgct |
244 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
21111746 |
ttctccttctccttgtttagcttcatttaatctctttattgct |
21111788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 21123378 - 21123499
Alignment:
| Q |
2 |
actctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
21123378 |
actctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtact |
21123477 |
T |
|
| Q |
102 |
catataccaaaattctatgctt |
123 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21123478 |
catataccaaaattctatgctt |
21123499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 21098637 - 21098492
Alignment:
| Q |
71 |
ttttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaa |
170 |
Q |
| |
|
||||| |||||||| |||| | ||||||||| || ||||| | ||||| || || ||| | ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
21098637 |
ttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaa |
21098538 |
T |
|
| Q |
171 |
gccttccaatgatgcttacttcagcaagaaactctccttccccttg |
216 |
Q |
| |
|
||||||||||||| | ||||||||| ||||| || ||||| ||||| |
|
|
| T |
21098537 |
gccttccaatgattcctacttcagctagaaattcaccttcaccttg |
21098492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 21108256 - 21108111
Alignment:
| Q |
71 |
ttttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaa |
170 |
Q |
| |
|
||||| |||||||| |||| | ||||||||| || ||||| | ||||| || || ||| | ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
21108256 |
ttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaa |
21108157 |
T |
|
| Q |
171 |
gccttccaatgatgcttacttcagcaagaaactctccttccccttg |
216 |
Q |
| |
|
||||||||||||| | ||||||||| ||||| || ||||| ||||| |
|
|
| T |
21108156 |
gccttccaatgattcctacttcagctagaaattcaccttctccttg |
21108111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 29213204 - 29213252
Alignment:
| Q |
132 |
cacaatatccccacatttcaatcaagttcatgtggttaagccttccaat |
180 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
29213204 |
cacaataaccccacaattcaatcaaattcatgtggttaagctttccaat |
29213252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 26751165 - 26751275
Alignment:
| Q |
94 |
catgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttca |
193 |
Q |
| |
|
|||||||||||| ||||| | ||||||||| || ||| ||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26751165 |
catgtactcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcg |
26751264 |
T |
|
| Q |
194 |
gcaagaaactc |
204 |
Q |
| |
|
||||||||||| |
|
|
| T |
26751265 |
gcaagaaactc |
26751275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 26713967 - 26714103
Alignment:
| Q |
68 |
agattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggt |
167 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||| ||||| | | |||| || || ||| ||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
26713967 |
agattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggt |
26714066 |
T |
|
| Q |
168 |
taagccttccaatgatgcttacttcagcaagaaactc |
204 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26714067 |
taagccttccaatgatgctaacttctgcaagaaactc |
26714103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 26737197 - 26737339
Alignment:
| Q |
62 |
gatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttca |
161 |
Q |
| |
|
||||| ||||| |||||||||| |||| | |||||||||||| ||||| | | |||| || || ||| ||||||| ||||||||| |||| || |||| |
|
|
| T |
26737197 |
gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattca |
26737296 |
T |
|
| Q |
162 |
tgtggttaagccttccaatgatgcttacttcagcaagaaactc |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26737297 |
tgtggttaagccttccaatgatgctaacttctgcaagaaactc |
26737339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 26744240 - 26744350
Alignment:
| Q |
94 |
catgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttca |
193 |
Q |
| |
|
|||| |||| || ||||| | |||||| || || ||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26744240 |
catgcactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttca |
26744339 |
T |
|
| Q |
194 |
gcaagaaactc |
204 |
Q |
| |
|
||||||||||| |
|
|
| T |
26744340 |
gcaagaaactc |
26744350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 47212442 - 47212535
Alignment:
| Q |
132 |
cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttc |
225 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || ||||||||| |||| |||||||| ||||| |
|
|
| T |
47212442 |
cacaataaccccacatttcaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc |
47212535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 26698809 - 26698951
Alignment:
| Q |
62 |
gatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttca |
161 |
Q |
| |
|
||||| ||||| |||||||||| |||| | |||||||||||| ||||| | ||| || || || || ||||||| ||||||||| | ||||| |||| |
|
|
| T |
26698809 |
gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattca |
26698908 |
T |
|
| Q |
162 |
tgtggttaagccttccaatgatgcttacttcagcaagaaactc |
204 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26698909 |
tgtgattaagccttccaatgatgctaacttcagcaagaaactc |
26698951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 26733972 - 26734114
Alignment:
| Q |
62 |
gatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttca |
161 |
Q |
| |
|
||||| ||||| |||||||||| |||| | |||||||||||| ||||| | ||| || || || || ||||||| ||||||||| | ||||| |||| |
|
|
| T |
26733972 |
gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattca |
26734071 |
T |
|
| Q |
162 |
tgtggttaagccttccaatgatgcttacttcagcaagaaactc |
204 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
26734072 |
tgtgattaagccttccaatgatgctaacttcaacaagaaactc |
26734114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26690414 - 26690345
Alignment:
| Q |
132 |
cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa |
201 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
26690414 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa |
26690345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26731725 - 26731656
Alignment:
| Q |
132 |
cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa |
201 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
26731725 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa |
26731656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26694575 - 26694506
Alignment:
| Q |
132 |
cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa |
201 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
26694575 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaagttcagcaagaaa |
26694506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 47193485 - 47193355
Alignment:
| Q |
98 |
tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaa |
197 |
Q |
| |
|
|||||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| || ||||| ||||| | | | ||||| |||||| |||||| | |
|
|
| T |
47193485 |
tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagcta |
47193386 |
T |
|
| Q |
198 |
gaaactctccttccccttgattagcttcatt |
228 |
Q |
| |
|
|||| || |||| || |||| ||||||||| |
|
|
| T |
47193385 |
gaaattcagcttctccctgatgagcttcatt |
47193355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 9792585 - 9792530
Alignment:
| Q |
98 |
tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaat |
153 |
Q |
| |
|
|||||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
9792585 |
tactcataaaccaaaagtctatttttcccttcaacacaatatccccacatatcaat |
9792530 |
T |
|
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