View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19152_high_15 (Length: 247)
Name: NF19152_high_15
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 34299373 - 34299247
Alignment:
| Q |
13 |
aatatataaaccagccataataatacgaatcattataattatccgacaacaggtaacgactgtttaagaaataaattacaagttaacataaaaagaattg |
112 |
Q |
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| T |
34299373 |
aatatataaaccagccataataatacgaatcattataattatccgacaacaggtaacgactgtttaagaaataaattacaagttaacataaaaagaattg |
34299274 |
T |
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| Q |
113 |
tgaacagatatctccattcgtcctctc |
139 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
34299273 |
tgaacagatatctctattcgtcctctc |
34299247 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 34303221 - 34303150
Alignment:
| Q |
34 |
aatacgaatcattataattatccgacaacaggtaacgactgtttaagaaataaattacaagttaacataaaa |
105 |
Q |
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|||| ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
34303221 |
aataagaatcattataattatccgactataggtaacgattgtttaagaaaaaaattacaagttaacataaaa |
34303150 |
T |
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