View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19152_high_3 (Length: 520)
Name: NF19152_high_3
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_high_3 |
 | |
|
| [»] scaffold0187 (6 HSPs) |
| | |
|
Alignment Details
Target: scaffold0187 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Complemental strand, 419 - 1
Alignment:
| Q |
10 |
aagaatatattttgatggagggactaacttgattgatatttttcagtcaaggttatagttttaattgatatgttgatgtgcctttgtccaaaagttgaat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419 |
aagaaaatattttgatggagggactaacttgattgatatttttcaatcaaggttatagttttaattgatatgttgatgtgcctttgtccaaaagttgaat |
320 |
T |
|
| Q |
110 |
cataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattccttgtctttgtttaacaaaaagggtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
319 |
cataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattccttgtctttgtttaacaaaaagggtg |
220 |
T |
|
| Q |
210 |
tttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaac---acacttcctttcttaaatactactttctagtc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
219 |
tttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacaacacttcctttcttcaatactactttctagtc |
120 |
T |
|
| Q |
307 |
actaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119 |
actaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatc |
20 |
T |
|
| Q |
407 |
taaatcatcatcattcagg |
425 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19 |
taaatcatcatcattcagg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 100 - 506
Target Start/End: Complemental strand, 27791 - 27378
Alignment:
| Q |
100 |
aaagttgaatcataatttactgttccatgtgaacttgtttaaaccat--gaatattggactcaccctagtggtttgaatccgattcctt-gtctttgttt |
196 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| |||||||| |||| |||| |
|
|
| T |
27791 |
aaagttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccccagtggtttgaatcagattcctttgtctaagttt |
27692 |
T |
|
| Q |
197 |
aacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctttcttaaatacta |
296 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||| || ||| ||||||| |
|
|
| T |
27691 |
aacaaaaaggttgttta----taattagtactatataaatatagaccccctagctttcaatttgtagcacaacacaag-cacttctttccttcaatacta |
27597 |
T |
|
| Q |
297 |
ctttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaga |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27596 |
ctttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaaa |
27497 |
T |
|
| Q |
397 |
ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgc |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27496 |
ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgc |
27397 |
T |
|
| Q |
488 |
ttcatatgataacaaagtg |
506 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27396 |
ttcatatgataacaaagtg |
27378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 98 - 284
Target Start/End: Complemental strand, 7096 - 6904
Alignment:
| Q |
98 |
caaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtt |
195 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
|
|
| T |
7096 |
caaaagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtt |
6997 |
T |
|
| Q |
196 |
taacaaaaagggtgtttag-tagtaa---ttggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctt |
284 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| || || || ||||| | ||||||||||||| |
|
|
| T |
6996 |
taacaaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagcttccaagttttagcacaacataacacacttcctt |
6904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 98 - 284
Target Start/End: Complemental strand, 17424 - 17232
Alignment:
| Q |
98 |
caaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtt |
195 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
|
|
| T |
17424 |
caaaagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtt |
17325 |
T |
|
| Q |
196 |
taacaaaaagggtgtttag-tagtaa---ttggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctt |
284 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| || || || ||||| | ||||||||||||| |
|
|
| T |
17324 |
taacaaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagcttccaagttttagcacaacataacacacttcctt |
17232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 469
Target Start/End: Complemental strand, 6860 - 6765
Alignment:
| Q |
368 |
tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga |
467 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
6860 |
tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga |
6767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 469
Target Start/End: Complemental strand, 17188 - 17093
Alignment:
| Q |
368 |
tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga |
467 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
17188 |
tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga |
17095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 100 - 506
Target Start/End: Original strand, 37911286 - 37911699
Alignment:
| Q |
100 |
aaagttgaatcataatttactgttccatgtgaacttgtttaaaccat--gaatattggactcaccctagtggtttgaatccgattcctt-gtctttgttt |
196 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| |||||||| |||| |||| |
|
|
| T |
37911286 |
aaagttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccccagtggtttgaatcagattcctttgtctaagttt |
37911385 |
T |
|
| Q |
197 |
aacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctttcttaaatacta |
296 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||| || ||| ||||||| |
|
|
| T |
37911386 |
aacaaaaaggttgttta----taattagtactatataaatatagaccccctagctttcaatttgtagcacaacacaag-cacttctttccttcaatacta |
37911480 |
T |
|
| Q |
297 |
ctttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaga |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37911481 |
ctttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaaa |
37911580 |
T |
|
| Q |
397 |
ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgc |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37911581 |
ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgc |
37911680 |
T |
|
| Q |
488 |
ttcatatgataacaaagtg |
506 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37911681 |
ttcatatgataacaaagtg |
37911699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 95 - 506
Target Start/End: Original strand, 37881337 - 37881754
Alignment:
| Q |
95 |
gtccaaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcctt--gtcttt |
192 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||| |||||||||||| |||||||| ||||||| | ||| ||||||| |||||| | ||||| |
|
|
| T |
37881337 |
gtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtctta |
37881436 |
T |
|
| Q |
193 |
gtttaacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaa-cacacttcctttcttaaa |
291 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
37881437 |
gtttaacaaaa-gggtgtttatgagtaattagtactatataaattaagactccctagctttcagattgtaacacaagacaaacacacttcctttcttcaa |
37881535 |
T |
|
| Q |
292 |
tactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaa |
391 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | | |||| ||||||||||||||| |
|
|
| T |
37881536 |
tactactttctagtcaccaaggataattaatattctcactctcaccaaccaaagagtc-accactctatac-taactagtgaaatgggaggaaacag--- |
37881630 |
T |
|
| Q |
392 |
tcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgat |
482 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37881631 |
tcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgat |
37881730 |
T |
|
| Q |
483 |
aatgcttcatatgataacaaagtg |
506 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37881731 |
aatgcttcatatgataacaaagtg |
37881754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 327 - 506
Target Start/End: Original strand, 37867531 - 37867714
Alignment:
| Q |
327 |
tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt |
426 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37867531 |
tcactctcaccaaccaaagtgtc-accactctatac-tcagtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt |
37867625 |
T |
|
| Q |
427 |
cagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgcttcatatgataacaaagtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867626 |
cagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtg |
37867714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 387 - 506
Target Start/End: Original strand, 37855398 - 37855526
Alignment:
| Q |
387 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattatt |
477 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37855398 |
aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattatt |
37855497 |
T |
|
| Q |
478 |
atgataatgcttcatatgataacaaagtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37855498 |
atgataatgcttcatatgataacaaagtg |
37855526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 37855174 - 37855324
Alignment:
| Q |
136 |
gtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtttaacaaaaagggtgtttagtagtaattggtactatata |
233 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
37855174 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatata |
37855273 |
T |
|
| Q |
234 |
aactgagaccccctagctttcagattgtaacacaagacaacacacttcctt |
284 |
Q |
| |
|
|| |||||||||||||||| || ||||| ||||| | ||||||||||||| |
|
|
| T |
37855274 |
aattgagaccccctagcttccaagttgtagcacaacataacacacttcctt |
37855324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 277
Target Start/End: Original strand, 37867379 - 37867493
Alignment:
| Q |
167 |
tggtttgaatccgattccttgtctttgtttaacaaaaaggg-tgttta---gtagtaattggtactatataaactgagaccccctagctttcagattgta |
262 |
Q |
| |
|
||||||||||| ||||| ||||||| | |||||||||| || |||||| ||||||||| |||||||||||| ||||||||| |||||| || ||||| |
|
|
| T |
37867379 |
tggtttgaatcagattctttgtcttagcttaacaaaaaaggctgtttattagtagtaatttgtactatataaattgagaccccatagcttccaagttgta |
37867478 |
T |
|
| Q |
263 |
acacaagacaacaca |
277 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
37867479 |
gcacaacacaacaca |
37867493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 37854886 - 37854926
Alignment:
| Q |
99 |
aaaagttgaatcataatttactgttccatgtgaacttgttt |
139 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
37854886 |
aaaagttgaatcataattcactgttccatgtgatcttgttt |
37854926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 327 - 506
Target Start/End: Complemental strand, 9239873 - 9239690
Alignment:
| Q |
327 |
tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt |
426 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9239873 |
tcactctcaccaaccaaagagtcg-ccactctatac-tcggtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt |
9239779 |
T |
|
| Q |
427 |
cagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgcttcatatgataacaaagtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9239778 |
cagttttcaacatattcaaatctagcaataacaagcaaagaggaggaggagggtattattatgataatgcttcatatgataacaaagtg |
9239690 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 9240025 - 9239911
Alignment:
| Q |
167 |
tggtttgaatccgattccttgtctttgtttaacaaaaagggt-gttta---gtagtaattggtactatataaactgagaccccctagctttcagattgta |
262 |
Q |
| |
|
||||||||||| ||||| ||||||| | |||| ||||| ||| ||||| ||||||||| |||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
9240025 |
tggtttgaatcagattctttgtcttagcttaataaaaaaggttgtttattagtagtaatttgtactatataaattgagaccccctagcttccaagttgta |
9239926 |
T |
|
| Q |
263 |
acacaagacaacaca |
277 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
9239925 |
tcacaacacaacaca |
9239911 |
T |
|
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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 41513908 - 41513870
Alignment:
| Q |
16 |
atattttgatggagggactaacttgattgatatttttca |
54 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
41513908 |
atattttgatggagagactaaattgattgatatttttca |
41513870 |
T |
|
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