View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19152_high_5 (Length: 465)
Name: NF19152_high_5
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 38250043 - 38249590
Alignment:
| Q |
12 |
aagaaaataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
38250043 |
aagaaaataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagataagatactagagttctcaacaataatctacgaat |
38249944 |
T |
|
| Q |
112 |
taaacacggcagcatatgtaatagcagaattaatgtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagc |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249943 |
taaacacggcagcatatgtaatagcagaattaatgtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagc |
38249844 |
T |
|
| Q |
212 |
attagtccgacacagacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatcgttca |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249843 |
attagtccgacacaaacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatcgttca |
38249744 |
T |
|
| Q |
312 |
cagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttca |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249743 |
cagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttca |
38249644 |
T |
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| Q |
412 |
atcccaatgctcgtactctcactttcgatactttttgccatgaacctgactcat |
465 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38249643 |
atcccaatgctcttactctcactttcaatactttttgccatgaacctgactcat |
38249590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 38255152 - 38254707
Alignment:
| Q |
12 |
aagaaaataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaat |
111 |
Q |
| |
|
|||| |||| || |||||||||||| | ||||||||||||||| |||||||| || |||||||| |||| ||||||||| |||||||||| || |
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| T |
38255152 |
aagataatagctttaataaatccaaaattaaaaactacttatgcattaaatttaatgaaataagat-----actacagttctcaataataatctaccgat |
38255058 |
T |
|
| Q |
112 |
taaacacggcagcatatgtaatagcag----aattaatg-tttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataact |
206 |
Q |
| |
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|||| | |||||||||| |||| ||| || ||||| |||||||| ||||||||| | |||||||| ||||| ||| | |||||||| || |
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| T |
38255057 |
taaagatggcagcatatttaattgcaatagtaagtaatggtttggactccatccaatttt----gcagcaacataagtttctaac----aaggcatagct |
38254966 |
T |
|
| Q |
207 |
tcagcattagtccgacacagacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatc |
306 |
Q |
| |
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| ||||||||| ||| |||||| ||||| |||||||||||||| ||||||| ||| || || | ||| || ||||| || | ||||||||| | |
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| T |
38254965 |
ctaacattagtcccacatgaacgaagtgtatcagagtaggagataaaacgagggttaaatgcataattgtgtccacatatttcttcgagcatcatataac |
38254866 |
T |
|
| Q |
307 |
gttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctc |
406 |
Q |
| |
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||||| |||||||| |||| |||| || | ||| || ||||| | ||| ||| ||| ||||||||||||||| ||||||||| |||| | |||| |
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| T |
38254865 |
tttcaccctccaaaccataactataaagtttctgttccgttgcaaagactaagagactaccattcataaccataaactttctaacattgggatttgtctc |
38254766 |
T |
|
| Q |
407 |
cttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactcat |
465 |
Q |
| |
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|||||||||||||||| ||| ||||||||| |||| |||| ||| ||||||||||||| |
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| T |
38254765 |
attcaatcccaatgctcttaccctcactttcaatacctttttccacgaacctgactcat |
38254707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 285 - 464
Target Start/End: Original strand, 20655704 - 20655883
Alignment:
| Q |
285 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
384 |
Q |
| |
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||||| || ||||||||||| | ||||| |||||||| ||| ||||| || |||| |||| ||||| ||| |||| ||| |||||||||||||||| |
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| T |
20655704 |
atttcttcgaccatcatataactttcaccctccaaaccataaccgtaaagtttctctttcgtaggaaaaactaatagattaccattcataaccataaacc |
20655803 |
T |
|
| Q |
385 |
ctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactca |
464 |
Q |
| |
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||||||||||||||| | |||| |||||||||||||||| |||||||||||| |||| |||| ||| ||||||||||| |
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| T |
20655804 |
ctctaacattaggatttgtctcattcaatcccaatgctcttactctcacttttaatacctttttccacaaacctgactca |
20655883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 465
Target Start/End: Complemental strand, 20657354 - 20657235
Alignment:
| Q |
346 |
tagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatacttt |
445 |
Q |
| |
|
||||||||| ||| |||| ||| ||||||| ||||||||||||||||||||||| | |||| ||||||| |||||||| ||| |||||| || |||| || |
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|
| T |
20657354 |
tagcaaaaactaagagattaccattcataaacataaaccctctaacattaggatttgtctcattcaatctcaatgctcttaccctcactgtcaatacctt |
20657255 |
T |
|
| Q |
446 |
ttgccatgaacctgactcat |
465 |
Q |
| |
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|| ||| ||||||||||||| |
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| T |
20657254 |
tttccacgaacctgactcat |
20657235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 462
Target Start/End: Original strand, 12035623 - 12035815
Alignment:
| Q |
276 |
tgttggcaaatttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataa |
375 |
Q |
| |
|
||||| || ||||| || ||||||||||| | ||||| |||||||| | ||||||| || ||||| |||||||||| || |||| || ||||||| |
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|
| T |
12035623 |
tgttgacacatttcttcgaccatcatataactttcaccctccaaaccatagctgtaaagtttctcttccgtagcaaaaacgaagagattacgattcataa |
12035722 |
T |
|
| Q |
376 |
ccataaaccctc------taacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgact |
462 |
Q |
| |
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|||||||||||| |||||||||||| | |||| |||||||||||||||| ||| |||||||| |||| |||| ||| |||||||||| |
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| T |
12035723 |
ccataaaccctctaacattaacattaggatttgtctcattcaatcccaatgctcttaccctcacttttaatacctttttccacgaacctgact |
12035815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 12037251 - 12037137
Alignment:
| Q |
285 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
384 |
Q |
| |
|
||||| || ||||||||||| | ||||| | |||||| ||||||||| || |||| ||||||||| ||| |||| ||| |||||||||||||||| |
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|
| T |
12037251 |
atttcttcgaccatcatataactttcacccttcaaaccataactgtaaagtttctctttcatagcaaaaactaatagattaccattcataaccataaacc |
12037152 |
T |
|
| Q |
385 |
ctctaacattaggat |
399 |
Q |
| |
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||||||||| ||||| |
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|
| T |
12037151 |
ctctaacatgaggat |
12037137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 12036980 - 12036918
Alignment:
| Q |
403 |
tctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactcat |
465 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
12036980 |
tctcattcaatcccaatgctcttaacctcactttcaatacctttttccacgaacctgactcat |
12036918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 22178097 - 22177656
Alignment:
| Q |
12 |
aagaaaataactata--ataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaa |
109 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||| ||||| |||||||| ||| | || |||||||| ||||||||| |||||||||| | |
|
|
| T |
22178097 |
aagaaaataactatataataaatccaaaattaaaaactatttatgcattaaattt-----aatgaaataagatactacagttctcaataataatctacga |
22178003 |
T |
|
| Q |
110 |
attaaacacggcagcatatgtaatagcagaattaat-gtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttc |
208 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| || |||| ||||||||| |||||||| | ||| ||| | || ||| ||||||||| || |
|
|
| T |
22178002 |
attaaacatggcagcatatgaaattgcaaaagtaatggtttggactccatccaat----ttcccagaaac----atcactttctaacaaggcatagctct |
22177911 |
T |
|
| Q |
209 |
agcattagtccgacacaga-cgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatcg |
307 |
Q |
| |
|
||||||||||| || ||| ||||| ||||| ||||| |||||||| || || | ||| || || | ||| | || ||||| || ||||||||||| | |
|
|
| T |
22177910 |
agcattagtcccgca-agagcgaagtgtatcagagtatgagataaaacggggtttaaatgcataattgtgtcgacatatttcttcgaccatcatataact |
22177812 |
T |
|
| Q |
308 |
ttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctcc |
407 |
Q |
| |
|
||||| |||||||| |||| |||| || ||||| |||||||| | ||| |||| ||| |||||||| ||||||||||||||||| |||| | |||| |
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|
| T |
22177811 |
ttcaccctccaaaccataactataaagtttctcttccgtagcaaagactaagagattaccattcataacaataaaccctctaacattgggatttgtctca |
22177712 |
T |
|
| Q |
408 |
ttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactc |
463 |
Q |
| |
|
||||||| |||||||| ||| ||||||||| |||| |||| || ||||||||||| |
|
|
| T |
22177711 |
ttcaatctcaatgctcttaccctcactttcaatacctttttgcacgaacctgactc |
22177656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 463
Target Start/End: Complemental strand, 22169499 - 22169381
Alignment:
| Q |
345 |
gtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactt |
444 |
Q |
| |
|
|||||||| | ||| |||| ||| |||||||||||||||||||||||||| |||| | |||| |||||| |||||||| ||| ||||||||| |||| | |
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| T |
22169499 |
gtagcaaagactaagagattaccattcataaccataaaccctctaacattgggatttgtctcattcaatttcaatgctcttaccctcactttcaatacct |
22169400 |
T |
|
| Q |
445 |
tttgccatgaacctgactc |
463 |
Q |
| |
|
||| ||| ||||||||||| |
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| T |
22169399 |
ttttccacgaacctgactc |
22169381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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