View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19152_high_6 (Length: 418)
Name: NF19152_high_6
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_high_6 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 47 - 418
Target Start/End: Original strand, 18658313 - 18658684
Alignment:
| Q |
47 |
ctctcttacccaagttaccaaccttccattatatgccacttctccatcaactccttctatattcatcattgttgatctttttccagttatcatctccaac |
146 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
18658313 |
ctctcttacccaagttatcaaccttccattgtatgccatttctccatcaacgtcttctatattcatcatcgttggactctttccagttatcatctccaac |
18658412 |
T |
|
| Q |
147 |
aaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgaga |
246 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18658413 |
aatacaaccccataaccataaacatccactttagatgttattggcaaattgaaaatccactcaggggccatatatcctcttgttcctctaatcattgaga |
18658512 |
T |
|
| Q |
247 |
attctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgagg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18658513 |
attctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgagg |
18658612 |
T |
|
| Q |
347 |
ctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18658613 |
ctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaa |
18658684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 47 - 418
Target Start/End: Original strand, 21111191 - 21111562
Alignment:
| Q |
47 |
ctctcttacccaagttaccaaccttccattatatgccacttctccatcaactccttctatattcatcattgttgatctttttccagttatcatctccaac |
146 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||| |||||| |
|
|
| T |
21111191 |
ctctcttacccaatttatcaaccttccattgtatgccacttctccatcaactccttccatattcatcattgttggactctttccggttatcatatccaac |
21111290 |
T |
|
| Q |
147 |
aaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgaga |
246 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21111291 |
aaaacaaccccataactataaacatccactttagatgttattggtgaattggaaatccattcaggggccatatatcctcttgttcctctaatcattgaga |
21111390 |
T |
|
| Q |
247 |
attctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgagg |
346 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
21111391 |
attctgaattattattaagattgtttctgcttttcagcttagacaatccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgagg |
21111490 |
T |
|
| Q |
347 |
ctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaa |
418 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
21111491 |
ctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaactctagctgttcctaa |
21111562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 47 - 418
Target Start/End: Original strand, 21130151 - 21130522
Alignment:
| Q |
47 |
ctctcttacccaagttaccaaccttccattatatgccacttctccatcaactccttctatattcatcattgttgatctttttccagttatcatctccaac |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| |
|
|
| T |
21130151 |
ctctcttacccaagttatcaaccttccattatatgtcccttctccatcaactccttctatattcatcattgttggactctttccggttatcatctctaac |
21130250 |
T |
|
| Q |
147 |
aaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgaga |
246 |
Q |
| |
|
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
21130251 |
acgacaaccccgtaactataaacatccactttagatgttattggtaaattgaaaatccactcaggtgccatatatcctcgtgttcctctaatcattgaga |
21130350 |
T |
|
| Q |
247 |
attctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgagg |
346 |
Q |
| |
|
|| ||||| |||||| ||| ||||||| ||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
21130351 |
atcctgaactattatcgagattgtttcgattttgtagcttagacaatccaaaatcggctaacttgggctgaaagttagaatcaagaagtatattttgagg |
21130450 |
T |
|
| Q |
347 |
ctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
21130451 |
ctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaa |
21130522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 150 - 418
Target Start/End: Original strand, 21123126 - 21123394
Alignment:
| Q |
150 |
acaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgagaatt |
249 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21123126 |
acaaccccataactataaacatccactttagatgttattggtaaattggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaatt |
21123225 |
T |
|
| Q |
250 |
ctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctt |
349 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21123226 |
ctgaattattattaagattgtttctgcttttcagcttagacaatccaaaatctgctaacttgggttgaaagttagaatcaagaagtatattttgaggctt |
21123325 |
T |
|
| Q |
350 |
tatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaa |
418 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
21123326 |
tatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaa |
21123394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 123 - 404
Target Start/End: Complemental strand, 21108595 - 21108317
Alignment:
| Q |
123 |
ctttttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatc |
222 |
Q |
| |
|
|||||||| |||||||| ||||| | ||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| | |
|
|
| T |
21108595 |
ctttttcctgttatcatttccaaaacaactattccataactataaacatccaccttagatgttattggcaaattgaaaatccattcaggtgccatatacc |
21108496 |
T |
|
| Q |
223 |
ctcttgttcctctaatctttgagaattctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagtt |
322 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| || |||| | | ||| |||||| || ||||||||||| |||||||| || || ||||| |
|
|
| T |
21108495 |
ctcttgttcctctaatcattgagatgcatgaattatta---aggttgttcctgttttgcagctttgacaatccaaaatcggctaacttgggctggaagtt |
21108399 |
T |
|
| Q |
323 |
agaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaact |
404 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
21108398 |
agaatcaagaagtatgttttgtggctttatatcacaatgcaaaatccactccaaacattcttcatgtagatatgctaaaact |
21108317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 123 - 404
Target Start/End: Complemental strand, 21098976 - 21098698
Alignment:
| Q |
123 |
ctttttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatc |
222 |
Q |
| |
|
|||||||| |||||||| ||||| | ||| || ||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| | |
|
|
| T |
21098976 |
ctttttcctgttatcatttccaatacaactattccatagctataaacatctactttagatgttattggcaaattgaaaatccattctggggccatatacc |
21098877 |
T |
|
| Q |
223 |
ctcttgttcctctaatctttgagaattctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagtt |
322 |
Q |
| |
|
||||||||||||||||| | || | |||||| || ||| |||||| | ||| ||||||||| ||||||||||| |||||||| || | ||||| |
|
|
| T |
21098876 |
ctcttgttcctctaatcatagatacacttgaattgttg---agattgtttctgttttgcagcttagacaatccaaaatccgctaacttgggttcgaagtt |
21098780 |
T |
|
| Q |
323 |
agaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaact |
404 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
21098779 |
agaatcaagaagtatattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgtagatatgctaaaact |
21098698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 29212999 - 29213065
Alignment:
| Q |
321 |
ttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcat |
387 |
Q |
| |
|
|||||||| | ||| |||||||| ||||| | |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
29212999 |
ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat |
29213065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 39132613 - 39132214
Alignment:
| Q |
19 |
cttccacccaacatgcactccnnnnnnnctctcttacccaagttaccaaccttccattatatgccacttctccatcaactccttctatattcatcattgt |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39132613 |
cttccacccaacatgcactcctttttttctctcttacccaagttaccaaccttccattatatgccacttctccatcaactccttcaatattcatcattgt |
39132514 |
T |
|
| Q |
119 |
tgatctttttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
39132513 |
tgatctttttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccata |
39132414 |
T |
|
| Q |
219 |
tatcctcttgttcctctaatctttgagaattctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaa |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| | | |||||| || |||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
39132413 |
tatcctcttgttcctctaatcattgagaattctgaattactattgacattgtttctatttctcagcttagacaatccaaagtctgctaacttgggttgat |
39132314 |
T |
|
| Q |
319 |
agttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaa |
418 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
39132313 |
agttagaatcaagaagtatattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagctaggactctagctgttcctaa |
39132214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 390
Target Start/End: Original strand, 26675270 - 26675531
Alignment:
| Q |
126 |
tttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctc |
225 |
Q |
| |
|
||||| || ||||||||||||| ||||| ||||||||||||||||| || || || || ||||| || ||||||||||| ||||| ||||| || |||| |
|
|
| T |
26675270 |
tttccggtaatcatctccaacaccacaattccataactataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaacctc |
26675369 |
T |
|
| Q |
226 |
ttgttcctctaatctttgagaattctgaattattattaagactgtttcgggttttcagcttagataatccaaaatctgctaacttagggtgaaagttaga |
325 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||| ||| |||| | | |||||||| || ||||||||| ||| || || | | | ||| |
|
|
| T |
26675370 |
ttgttcctctcatccttgagaaacttgaattatta---agattgttcctatgtaatagcttagacaacccaaaatctactattttgggtcggtaatcaga |
26675466 |
T |
|
| Q |
326 |
atcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgta |
390 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26675467 |
gtcaataagtatgttttgaggctttatatcacaatgcaaaatccactccaaacattcttcatgta |
26675531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 26698635 - 26698750
Alignment:
| Q |
282 |
agcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacatt |
381 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| ||| | | || |||| |||||||||||| ||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
26698635 |
agcttagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacact |
26698734 |
T |
|
| Q |
382 |
cttcatgtagataagc |
397 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
26698735 |
cttcgtgtaaataagc |
26698750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 26733798 - 26733913
Alignment:
| Q |
282 |
agcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacatt |
381 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| ||| | | || |||| |||||||||||| ||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
26733798 |
agcttagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacact |
26733897 |
T |
|
| Q |
382 |
cttcatgtagataagc |
397 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
26733898 |
cttcgtgtaaataagc |
26733913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 26737023 - 26737138
Alignment:
| Q |
282 |
agcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacatt |
381 |
Q |
| |
|
|||||||| || ||||||||||| | |||||| || | | ||| |||| |||||||||||| ||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
26737023 |
agcttagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacact |
26737122 |
T |
|
| Q |
382 |
cttcatgtagataagc |
397 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
26737123 |
cttcatgtaaataagc |
26737138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 47212046 - 47212153
Alignment:
| Q |
127 |
ttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctct |
226 |
Q |
| |
|
||||||||||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||| ||| |||||||||||||| ||||| || ||||| |
|
|
| T |
47212046 |
ttccagttatcatttccaacacaaccattccatagctataaacatcaactttagatgttattgaatgattcaaaatccactcaggtgccatgtaacctct |
47212145 |
T |
|
| Q |
227 |
tgttcctc |
234 |
Q |
| |
|
|||||||| |
|
|
| T |
47212146 |
tgttcctc |
47212153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 26744079 - 26744149
Alignment:
| Q |
327 |
tcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagc |
397 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
26744079 |
tcaacaagtatgttttgcggctttatatcacaatgcaaaatccactccaaacattcttcgtgtaaataagc |
26744149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 26713787 - 26713902
Alignment:
| Q |
282 |
agcttagataatccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacatt |
381 |
Q |
| |
|
|||||||| || ||||||||||| | |||||| || | | | | |||| |||||||||||| ||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
26713787 |
agcttagacaaaccaaaatctgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacact |
26713886 |
T |
|
| Q |
382 |
cttcatgtagataagc |
397 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
26713887 |
cttcatgtaaataagc |
26713902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 26690607 - 26690550
Alignment:
| Q |
333 |
agtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgta |
390 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26690607 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgta |
26690550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 26694768 - 26694711
Alignment:
| Q |
333 |
agtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgta |
390 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26694768 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgta |
26694711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 26731918 - 26731861
Alignment:
| Q |
333 |
agtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgta |
390 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26731918 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgta |
26731861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 26751004 - 26751067
Alignment:
| Q |
327 |
tcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgta |
390 |
Q |
| |
|
|||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
26751004 |
tcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgta |
26751067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 47193638 - 47193562
Alignment:
| Q |
339 |
ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc |
415 |
Q |
| |
|
|||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | ||||||||||||| |
|
|
| T |
47193638 |
ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc |
47193562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 47212237 - 47212313
Alignment:
| Q |
321 |
ttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagc |
397 |
Q |
| |
|
|||||||| | ||| |||||||| ||||| | |||||||||||||||||| |||||||| |||||||| | |||||| |
|
|
| T |
47212237 |
ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagc |
47212313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 26690781 - 26690690
Alignment:
| Q |
156 |
ccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgagaa |
247 |
Q |
| |
|
||||| ||||||||||| || || || || ||||| || ||||||||||| ||||| ||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
26690781 |
ccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaacctcttgttcctctcatccttgagaa |
26690690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 26732092 - 26732001
Alignment:
| Q |
156 |
ccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgagaa |
247 |
Q |
| |
|
||||| ||||||||||| || || || || ||||| || ||||||||||| ||||| ||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
26732092 |
ccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaacctcttgttcctctcatccttgagaa |
26732001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 26713634 - 26713766
Alignment:
| Q |
126 |
tttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctc |
225 |
Q |
| |
|
||||| || ||||||||||||| |||| ||||| ||||||||||||||||| || || ||| | | ||||||| ||| ||||| ||||| || |||| |
|
|
| T |
26713634 |
tttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctc |
26713733 |
T |
|
| Q |
226 |
ttgttcctctaatctttgagaattctgaattat |
258 |
Q |
| |
|
||| |||| |||| ||||||| | |||||||| |
|
|
| T |
26713734 |
gtgtccctcgaatccttgagaagtttgaattat |
26713766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 26736870 - 26737002
Alignment:
| Q |
126 |
tttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctc |
225 |
Q |
| |
|
||||| || ||||||||||||| |||| ||||| ||||||||||||||||| || || ||| | | ||||||| ||| ||||| ||||| || |||| |
|
|
| T |
26736870 |
tttcctgtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctc |
26736969 |
T |
|
| Q |
226 |
ttgttcctctaatctttgagaattctgaattat |
258 |
Q |
| |
|
||| |||| |||| ||||||| | |||||||| |
|
|
| T |
26736970 |
gtgtccctcgaatccttgagaagtttgaattat |
26737002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 26750806 - 26750938
Alignment:
| Q |
126 |
tttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctc |
225 |
Q |
| |
|
||||| || ||||||||||||| ||| | ||||| |||||||| ||||||||||| || ||| | | ||||||| ||| ||||| ||||| || |||| |
|
|
| T |
26750806 |
tttccggtaatcatctccaacacaacgactccatagctataaacgtccactttagaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctc |
26750905 |
T |
|
| Q |
226 |
ttgttcctctaatctttgagaattctgaattat |
258 |
Q |
| |
|
|||| |||| |||| | ||||| | |||||||| |
|
|
| T |
26750906 |
ttgtccctcgaatcctcgagaaatttgaattat |
26750938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 26694942 - 26694851
Alignment:
| Q |
156 |
ccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctctaatctttgagaa |
247 |
Q |
| |
|
||||| ||||||||||| || || || || ||||| || ||||||||||| ||||| |||| || |||||||||||||| ||| ||||||| |
|
|
| T |
26694942 |
ccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtcccatgtaacctcttgttcctctcatccttgagaa |
26694851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 47193828 - 47193739
Alignment:
| Q |
146 |
caaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaatccactcaggggccatatatcctcttgttcctct |
235 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || || || | | ||| ||| ||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
47193828 |
caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctct |
47193739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 11791094 - 11791152
Alignment:
| Q |
336 |
atgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagata |
394 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
11791094 |
atgttttctggcttaatatcacaatgcaaaacccattccaaacactcctcatgtagata |
11791152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University