View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19152_low_1 (Length: 665)

Name: NF19152_low_1
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19152_low_1
NF19152_low_1
[»] chr6 (12 HSPs)
chr6 (112-642)||(9411715-9412242)
chr6 (127-301)||(6417024-6417198)
chr6 (163-286)||(11936024-11936147)
chr6 (163-286)||(11948004-11948127)
chr6 (183-233)||(28935338-28935388)
chr6 (153-214)||(7132324-7132385)
chr6 (153-214)||(7135247-7135308)
chr6 (153-214)||(7138170-7138231)
chr6 (183-302)||(6596241-6596357)
chr6 (183-231)||(6423907-6423955)
chr6 (183-231)||(6395539-6395587)
chr6 (191-231)||(6427183-6427223)
[»] chr1 (8 HSPs)
chr1 (20-556)||(7554868-7555411)
chr1 (164-307)||(19467418-19467561)
chr1 (115-296)||(9581627-9581808)
chr1 (596-641)||(7554786-7554831)
chr1 (334-467)||(9587021-9587154)
chr1 (247-296)||(9587198-9587247)
chr1 (24-69)||(33161362-33161407)
chr1 (268-301)||(52094092-52094125)
[»] chr4 (23 HSPs)
chr4 (129-565)||(8186311-8186750)
chr4 (112-307)||(1755479-1755674)
chr4 (119-233)||(553759-553873)
chr4 (110-307)||(7225094-7225290)
chr4 (184-307)||(571256-571379)
chr4 (153-231)||(661860-661938)
chr4 (354-468)||(532582-532696)
chr4 (113-207)||(53760229-53760323)
chr4 (111-220)||(1495619-1495728)
chr4 (148-305)||(21833248-21833405)
chr4 (352-423)||(1481561-1481632)
chr4 (153-307)||(641933-642087)
chr4 (153-235)||(55907651-55907733)
chr4 (493-569)||(1548016-1548092)
chr4 (187-235)||(3437630-3437678)
chr4 (184-307)||(7308477-7308600)
chr4 (112-214)||(1545883-1545985)
chr4 (512-554)||(1601179-1601221)
chr4 (30-67)||(553925-553962)
chr4 (386-475)||(1755308-1755397)
chr4 (268-317)||(2373565-2373614)
chr4 (25-69)||(532903-532947)
chr4 (261-305)||(659977-660021)
[»] chr7 (4 HSPs)
chr7 (127-233)||(10615713-10615819)
chr7 (138-307)||(10169011-10169180)
chr7 (138-307)||(10176536-10176705)
chr7 (112-307)||(7977799-7977994)
[»] chr8 (10 HSPs)
chr8 (159-547)||(18314620-18315010)
chr8 (188-307)||(32151894-32152013)
chr8 (151-307)||(14004069-14004225)
chr8 (114-233)||(17642872-17642991)
chr8 (109-233)||(17635588-17635712)
chr8 (184-307)||(21236080-21236203)
chr8 (163-285)||(28246044-28246166)
chr8 (112-214)||(34935922-34936024)
chr8 (151-235)||(5766579-5766663)
chr8 (184-232)||(18318650-18318698)
[»] chr5 (7 HSPs)
chr5 (361-472)||(28673460-28673571)
chr5 (351-472)||(28695700-28695821)
chr5 (167-255)||(41900484-41900572)
chr5 (353-448)||(41886774-41886869)
chr5 (169-233)||(28532813-28532877)
chr5 (352-472)||(29021555-29021675)
chr5 (204-255)||(32268513-32268564)
[»] chr3 (6 HSPs)
chr3 (127-301)||(13469599-13469773)
chr3 (111-307)||(51113131-51113327)
chr3 (163-286)||(1657474-1657597)
chr3 (179-228)||(51120658-51120707)
chr3 (112-233)||(51763325-51763446)
chr3 (265-307)||(51763487-51763529)
[»] scaffold1155 (1 HSPs)
scaffold1155 (111-214)||(1820-1923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (111-214)||(8293-8396)
[»] scaffold0105 (1 HSPs)
scaffold0105 (111-214)||(30583-30686)
[»] chr2 (1 HSPs)
chr2 (153-235)||(1036587-1036669)


Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 112 - 642
Target Start/End: Complemental strand, 9412242 - 9411715
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||||||| |||| |||||||| ||  |||||||| || | |||||||| | |||||| || ||   ||| |||||||||||||||||||||||||||||    
T  9412242 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 9412146  T
Q  212 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgt 311  Q
    |||||||||| ||||||  || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9412145 tttaacctcattcacttcctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacctgtgt 9412046  T
Q  312 tatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcact 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412045 tatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcact 9411946  T
Q  412 acatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcattgt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411945 acatcaacgacacatcactcttcaacttgtttaagaactgtaagcttctccaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcattgt 9411846  T
Q  512 ttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttgggaactat 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411845 ttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttgggaactat 9411746  T
Q  612 cctttacttagtgagattaaaatggaatacg 642  Q
    |||||||||||||||||||||||||||||||    
T  9411745 cctttacttagtgagattaaaatggaatacg 9411715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 127 - 301
Target Start/End: Complemental strand, 6417198 - 6417024
Alignment:
Q  127 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 226  Q
    |||||||| | ||||||||| |||| ||||||||||||||  | || | || ||| || ||||||||||||||||| | ||||||||| ||||| |||||    
T  6417198 cattgaacatcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcac 6417099  T
Q  227 ttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaact 301  Q
    ||||||| | || | |  | ||||  | | |||  |||| || ||||| ||||||||||||||||||||||||||    
T  6417098 ttgttcccacatcgttaatttcaacggtagtgatctgttccttattgcagaatgtttccctttgcttgaagaact 6417024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 11936024 - 11936147
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11936024 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11936123  T
Q  263 gttactcattgctgaatgtttccc 286  Q
    ||| ||||||||||| ||||||||    
T  11936124 gttcctcattgctgattgtttccc 11936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 11948004 - 11948127
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11948004 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11948103  T
Q  263 gttactcattgctgaatgtttccc 286  Q
    ||| ||||||||||| ||||||||    
T  11948104 gttcctcattgctgattgtttccc 11948127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 28935388 - 28935338
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 233  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  28935388 ttgcgagccttctcccaaaacattacaactttaacctcactcacatgttcc 28935338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 7132385 - 7132324
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7132385 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 7135308 - 7135247
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7135308 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 7138231 - 7138170
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7138231 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7138170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 6596241 - 6596357
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtt 282  Q
    ||||||| |||||||||||| || |||||||| ||||| ||||||||||| | ||   | | | || | |  ||||||||||||||||||||||| ||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataa---actttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  283 tccctttgcttgaagaactc 302  Q
    |||| |||||  ||||||||    
T  6596338 tcccattgctcaaagaactc 6596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 6423955 - 6423907
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  6423955 ttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 6395587 - 6395539
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||| |||| |||||||||||||||||||||| ||||| |||| |||||    
T  6395587 ttgcaagctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
Q  191 tttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Complemental strand, 7555411 - 7554868
Alignment:
Q  20 ctccttcctccctcgtcttttccataggttcaccaacctcacctcccttgtcttcgctcgcaactgccgtgatatcgacaagctacttagcgaaatctct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7555411 ctccttcctccctcgtcttttccataggttcaccaacctcacctcccttgtcttcgctcgcaactgccttgatatcgacaagctacttagcgaaatctct 7555312  T
Q  120 tgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555311 tgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacct 7555212  T
Q  220 cactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccccg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7555211 cactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacctgggttatccccg 7555112  T
Q  320 ---taaatttaaggatcatag---ctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactac 413  Q
       ||||||||||||||||||   ||| |||||| || | ||||||||||||||| |||||| ||||||||||| ||||||||||||||  ||| |||||    
T  7555111 taataaatttaaggatcatagtaacttccttaatgggttggagactctttcattggcactttccaaactcaccaggattaatctctctgaccattactac 7555012  T
Q  414 atcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggca-ttgtt 512  Q
    |||||||||| ||||||  |  |||||||||||||||| || |||||| |||||||||||||||||   |||  | |||||||||||| ||||| || ||    
T  7555011 atcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagctggcatttttt 7554912  T
Q  513 tctgctctctgtgagagaccaaccttgaggtctttgtcctttac 556  Q
    || ||||||  |||||||||||| ||||||||||| ||||||||    
T  7554911 tcagctctccatgagagaccaacattgaggtctttatcctttac 7554868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 19467418 - 19467561
Alignment:
Q  164 caccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttg 263  Q
    |||||| || |||| ||| ||||||| |||| | ||||||||||||||||| ||||| |||||||||| | | || |    | |||||| || |||| ||    
T  19467418 caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtttcgacattgcagatttcaataccactgacctg 19467517  T
Q  264 ttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    || ||||| || |||||||| |||||||| ||||||||| ||||    
T  19467518 ttcctcatcgcggaatgttttcctttgctcgaagaactcaacct 19467561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 296
Target Start/End: Complemental strand, 9581808 - 9581627
Alignment:
Q  115 tctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    ||||||||||||||||||| || ||||| ||  || | ||| ||||| ||  ||| |||||   |||| ||||||||||||||  ||| |||||||| ||    
T  9581808 tctcttgtttcccattgaaactcacatcgctcaatctctcccaccaatcctacattcctgctgatggactgcgagctttctccgtaaagattacaacgtt 9581709  T
Q  215 aacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 296  Q
     || || |||| |||||| || ||   |  | ||||||| ||||||||||| |||||||| |||||||| ||||| ||||||    
T  9581708 gacatctctcatttgttcgaacatccgtattttcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaa 9581627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 641
Target Start/End: Complemental strand, 7554831 - 7554786
Alignment:
Q  596 actcgttgggaactatcctttacttagtgagattaaaatggaatac 641  Q
    |||||||  ||||||||||| |||||||||||||||| ||||||||    
T  7554831 actcgttaagaactatccttcacttagtgagattaaactggaatac 7554786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 467
Target Start/End: Complemental strand, 9587154 - 9587021
Alignment:
Q  334 atagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactctt 433  Q
    ||||||||||  || |||| ||||||||||| ||  ||||||||| ||||  ||| |||||||||||||||||   |||| ||||| ||  ||| || ||    
T  9587154 atagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatctctctggtcagagctacctcaacaaccaatcgctttt 9587055  T
Q  434 caacttgtttaagaactgtaaacttctcgaagag 467  Q
    | ||||||| || || ||||| ||||| ||||||    
T  9587054 ccacttgttcaaaaattgtaatcttcttgaagag 9587021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 9587247 - 9587198
Alignment:
Q  247 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 296  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||| ||||||    
T  9587247 tcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaa 9587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 33161407 - 33161362
Alignment:
Q  24 ttcctccctcgtcttttccataggttcaccaacctcacctcccttg 69  Q
    |||||||||||||| ||  | |||||||||||||||||||||||||    
T  33161407 ttcctccctcgtctcttgaaaaggttcaccaacctcacctcccttg 33161362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 52094125 - 52094092
Alignment:
Q  268 tcattgctgaatgtttccctttgcttgaagaact 301  Q
    |||||||||||||||||||||| |||||||||||    
T  52094125 tcattgctgaatgtttccctttccttgaagaact 52094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 129 - 565
Target Start/End: Original strand, 8186311 - 8186750
Alignment:
Q  129 ttgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcactt 228  Q
    |||||||| ||||||||  || | || ||| |||||||||| ||||||| ||||||||||| | |||||| ||||||||||||||| ||||||||||| |    
T  8186311 ttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacat 8186410  T
Q  229 gttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccccgtaaatttaa 328  Q
    ||||||| || || ||||||||||||| |||| | || ||||| || || ||||| ||||| || ||||||||||| ||  || | ||     | || ||    
T  8186411 gttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcgatctcagtaaccctaaagagttcaa 8186510  T
Q  329 ggatc---atagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacaca 425  Q
      |||    || |||  || || | || ||| ||||||||||| |||||||||||||   |||| ||||||| |||  |||| |||| |||||||||| |    
T  8186511 caatctcagtatcttctttgatggagttgaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaa 8186610  T
Q  426 tcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcattgtttctgctctctgtg 525  Q
    |  || ||  ||||||| ||||| ||||| | ||||||||||||||||||||||   |||  |    |||||||||  ||||||| |||||| || || |    
T  8186611 ttgctttttcacttgttaaagaattgtaagcatctcgaagaggttatcatgtttaagtgttctcagttaaccaaagcaggcattgcttctgccctatggg 8186710  T
Q  526 agagaccaaccttgaggtctttgtcctttactaattattt 565  Q
    |||||||||| ||||||||||| ||||||||  |||||||    
T  8186711 agagaccaacgttgaggtctttatcctttaccgattattt 8186750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 1755674 - 1755479
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||||||| ||||||||||||| || |||||  || || | |||||||||| | |||| ||  | |  || |||| ||||||||| ||||| ||||||||    
T  1755674 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaac 1755575  T
Q  212 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    ||| ||||| ||||| |||||||| || | |  | || ||| ||||||||| || ||||||||||| |||||||||||||||||||||||| ||||    
T  1755574 tttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccctttgcttgaagaactcaacct 1755479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 553873 - 553759
Alignment:
Q  119 ttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacc 218  Q
    |||||| ||||||||||| |||||||| ||| | ||| |  |||||||||| || |||| ||| |||||||||||||||||||| ||||||||||| |||    
T  553873 ttgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacc 553774  T
Q  219 tcactcacttgttcc 233  Q
    || ||||| ||||||    
T  553773 tctctcacctgttcc 553759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 110 - 307
Target Start/End: Original strand, 7225094 - 7225290
Alignment:
Q  110 cgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattaca 209  Q
    |||||||||| |||| |||||||| || ||||||||| |||| || ||  || ||| ||| || |||  ||| |||| |||| | || ||||||||||||    
T  7225094 cgaaatctctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattaca 7225193  T
Q  210 actttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    ||||| ||||| ||||| ||||||| | |  ||||| ||| ||||| |||| |||| ||||| || || |||||||||||||| ||||||||||||||    
T  7225194 actttgacctctctcacatgttccacattt-attctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 571379 - 571256
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 283  Q
    ||||||| ||||||||||||||||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||||||| |||||  | || |||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgttt 571280  T
Q  284 ccctttgcttgaagaactcgacct 307  Q
    ||||||||| ||||||||| ||||    
T  571279 ccctttgctcgaagaactccacct 571256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 661938 - 661860
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    ||||||||| ||||||| || || | ||| |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  661938 tccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgtt 661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 468
Target Start/End: Complemental strand, 532696 - 532582
Alignment:
Q  354 gagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgta 453  Q
    ||||||||||||||  ||||||||||||||  |||| ||||||| |||  |||| ||||||||||||||  ||| || ||| ||||||| || || ||||    
T  532696 gagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgta 532597  T
Q  454 aacttctcgaagagg 468  Q
    | |||||||| ||||    
T  532596 agcttctcgaggagg 532582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 53760229 - 53760323
Alignment:
Q  113 aatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatatta 207  Q
    ||||||| ||||||||||||| || ||||||||  || | ||||||||| |||| |||| ||||| ||| ||||||||||||| |||||| ||||    
T  53760229 aatctctcgtttcccattgaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttgcgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 1495619 - 1495728
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    |||||||||  ||| ||||||||  | ||||| |||||| | ||  |||||||||| || ||||| || |||||||||  |||||||||||| |||||||    
T  1495619 gaaatctctctttttccattgaaaatcacatcccttgatttatctgaccaacccacgattcctgctataggattgcgatatttctcccaaaaaattacaa 1495718  T
Q  211 ctttaacctc 220  Q
    ||||||||||    
T  1495719 ctttaacctc 1495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 305
Target Start/End: Original strand, 21833248 - 21833405
Alignment:
Q  148 atatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctat 247  Q
    |||| |||||| |||||||||| || |||  ||| ||||||| |||  | ||||| ||||| ||||| ||||| ||||||||||||||||| | |  | |    
T  21833248 atatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaattt 21833347  T
Q  248 caatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgac 305  Q
    ||||| || |||| |||| ||||| |  ||||||||||| ||||  ||||||||||||    
T  21833348 caataccactgacctgttcctcatcgtcgaatgtttccccttgcacgaagaactcgac 21833405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 423
Target Start/End: Complemental strand, 1481632 - 1481561
Alignment:
Q  352 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgaca 423  Q
    ||||| ||||||||||| |||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgaca 1481561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 642087 - 641933
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaata 252  Q
    ||||||| | ||||||| ||||| | ||| |||| | |||||||||| || ||| |||||||||| || ||||  |||||||||||| |||| || || |    
T  642087 tccaaccgatccaccattcctgctaatgggttgcaatctttctcccagaagatttcaactttaacttctctcaaatgttccaaaatgaattccataaaaa 641988  T
Q  253 gcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
     ||  |||||||| || |||||  | ||||||||||| || |||||||| |||||    
T  641987 acaccgacttgttccttattgccaattgtttccctttactcgaagaacttgacct 641933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 55907651 - 55907733
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| |  || |||| |||||||||    
T  55907651 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 569
Target Start/End: Original strand, 1548016 - 1548092
Alignment:
Q  493 taaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaa 569  Q
    ||||||| ||||| |||| |||||||||| |||||  || ||| || |||||||| |||||||| ||||||||||||    
T  1548016 taaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttgaa 1548092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  187 gagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    |||||||||||||||| ||||||||||| ||||| |||| |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 7308600 - 7308477
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 283  Q
    |||||||||| ||||| || ||||||||||| ||||  |||||||||||| | ||   ||||||| ||| || |||| ||||||| ||||| || |||||    
T  7308600 tgcgagctttgtcccagaagattacaactttgacctgtctcacttgttcccacattagttctatccataacactgacatgttacttattgccgagtgttt 7308501  T
Q  284 ccctttgcttgaagaactcgacct 307  Q
     ||| | || |||||||| |||||    
T  7308500 tcctctactcgaagaactagacct 7308477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 1545985 - 1545883
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    ||||||||  ||| |||||||| || ||| |||||| | ||||   |||| |||| |||||||| | ||| |||||| ||||||| ||||||||||||||    
T  1545985 aaatctctacttttccattgaaactcacaacacttgttctttctgtccaagccactatccctgccaatgggttgcgatctttctctcaaaatattacaac 1545886  T
Q  212 ttt 214  Q
    |||    
T  1545885 ttt 1545883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 554
Target Start/End: Complemental strand, 1601221 - 1601179
Alignment:
Q  512 ttctgctctctgtgagagaccaaccttgaggtctttgtccttt 554  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  1601221 ttctgctctccgtgagagaccaacattgaggtctttatccttt 1601179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 553962 - 553925
Alignment:
Q  30 cctcgtcttttccataggttcaccaacctcacctccct 67  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  553962 cctcgccttttccaaaggttcaccaacctcacctccct 553925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 1755397 - 1755308
Alignment:
Q  386 caagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcat 475  Q
    ||||||||||||||||  ||||| | |||| ||| ||  |||||| ||   |||||| | |||||||||||||||||||||||| |||||    
T  1755397 caagattaatctctcttttcatcgccacataaacaaccgatcactttttcgcttgttcaggaactgtaaacttctcgaagaggtcatcat 1755308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 2373565 - 2373614
Alignment:
Q  268 tcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccc 317  Q
    |||||||||| |||||||||||||| |||||||| ||| || ||||||||    
T  2373565 tcattgctgattgtttccctttgctcgaagaacttgacttgagttatccc 2373614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 532947 - 532903
Alignment:
Q  25 tcctccctcgtcttttccataggttcaccaacctcacctcccttg 69  Q
    |||||||||| || |||| ||| ||||||||||||||||||||||    
T  532947 tcctccctcgcctcttccgtagattcaccaacctcacctcccttg 532903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 660021 - 659977
Alignment:
Q  261 ttgttactcattgctgaatgtttccctttgcttgaagaactcgac 305  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  660021 ttgtttctcatagctgattgtttccctttgcttgacgaactcgac 659977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 10615819 - 10615713
Alignment:
Q  127 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 226  Q
    |||||||| | ||||||||| |||||||||||||||||||  | || |||| ||| || ||||||||||||||||| ||||||||||| ||||| |||||    
T  10615819 cattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcac 10615720  T
Q  227 ttgttcc 233  Q
    |||||||    
T  10615719 ttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 138 - 307
Target Start/End: Original strand, 10169011 - 10169180
Alignment:
Q  138 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaa 237  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| |||||||||||| | |    
T  10169011 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgaca 10169110  T
Q  238 tggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    | |||  | | ||||  | ||||||||| || || || |||||||| |||||||||||||||||| ||||    
T  10169111 ttgatgattttaatactactgacttgtttcttatcgcagaatgttttcctttgcttgaagaactcaacct 10169180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 138 - 307
Target Start/End: Original strand, 10176536 - 10176705
Alignment:
Q  138 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaa 237  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| |||||||||||| | |    
T  10176536 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgaca 10176635  T
Q  238 tggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    | |||  | | ||||  | ||||||||| || || || |||||||| |||||||||||||||||| ||||    
T  10176636 ttgatgattttaatactactgacttgtttcttatcgcagaatgttttcctttgcttgaagaactcaacct 10176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 7977994 - 7977799
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||| |||||||||||||||||  | || |||||  || | |||||||| || ||||| || ||   ||| |||| || |||||||||||||||| ||||    
T  7977994 aaatttcttgtttcccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaac 7977895  T
Q  212 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    ||| ||||||||||  ||||| || || || ||||| |||| |||  || |||| ||||| || || |||||||||||||||||||||||||||||    
T  7977894 tttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccctttgcttgaagaactcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 159 - 547
Target Start/End: Original strand, 18314620 - 18315010
Alignment:
Q  159 caacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatg 258  Q
    ||||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| ||||||||| | |||||  | ||  | ||| || || ||| ||    
T  18314620 caacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactg 18314719  T
Q  259 acttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccccgtaaatttaaggatcat---agctttcttaatagggtaga 355  Q
    |  | || ||||||||||| |||||||||||||| ||||||||||||||  |||| |||    | || ||  |||||   ||||| || ||| |  ||||    
T  18314720 atctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagttaaaaaatcatgaaagcttactcaatggaataga 18314819  T
Q  356 gactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaa 455  Q
    |  ||||||||  |||||||||||||||   ||| ||||| || ||| |||| |||||||||||||   ||| || ||| ||||||| |||||||||||     
T  18314820 ggttctttcatc-acacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaag 18314918  T
Q  456 cttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtcttt 547  Q
    ||||||||||||   ||||| |||  ||||| |   |||||||| |  || |||| || ||||||| ||||||||||||| |||||||||||    
T  18314919 cttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaactttgaggtcttt 18315010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 32152013 - 32151894
Alignment:
Q  188 agctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccct 287  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    ||  ||||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  288 ttgcttgaagaactcgacct 307  Q
    ||||| |||||||| |||||    
T  32151913 ttgctcgaagaacttgacct 32151894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 14004225 - 14004069
Alignment:
Q  151 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaa 250  Q
    ||||||||||||||| | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||  |  ||||| | ||    
T  14004225 tttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaa 14004126  T
Q  251 tagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    ||||| |||  |    ||||||||||| ||||| |||||||| ||||||||||||||    
T  14004125 tagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacct 14004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 17642872 - 17642991
Alignment:
Q  114 atctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactt 213  Q
    ||||||||||| |||||||| || ||||||||  || | |||||||| | |||||| ||  | | ||| || | |||||||||||| |||||||||||||    
T  17642872 atctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactt 17642971  T
Q  214 taacctcactcacttgttcc 233  Q
    | ||||| ||||||||||||    
T  17642972 tgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 17635588 - 17635712
Alignment:
Q  109 gcgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattac 208  Q
    |||||||||||  ||| |||||||| || | ||||||  || | |||||||||| |||||| ||  | | ||| || |||||||||||||  ||||||||    
T  17635588 gcgaaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattac 17635687  T
Q  209 aactttaacctcactcacttgttcc 233  Q
    |||||| ||||| ||||||||||||    
T  17635688 aactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 21236203 - 21236080
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 283  Q
    ||||||| ||||||||||||| ||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||| ||| |||||  | || |||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgactagttgctcatctcggactgttt 21236104  T
Q  284 ccctttgcttgaagaactcgacct 307  Q
    | ||||||| ||||||||| ||||    
T  21236103 ctctttgctcgaagaactccacct 21236080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 28246044 - 28246166
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| |||||  |||||   || || ||||||||| ||| |||| |    
T  28246044 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgcgttccttcattgaatctatcaatcgcactgacct 28246143  T
Q  263 gttactcattgctgaatgtttcc 285  Q
    ||| ||||||| ||| |||||||    
T  28246144 gttcctcattgttgattgtttcc 28246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 34935922 - 34936024
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||| ||| |||||||||||||||| ||||||||  || | |||||||| |||| ||| ||   || ||| ||||||| |||||| ||||||||||||||    
T  34935922 aaatttctagtttcccattgaaccttacatcactcaatctctccaaccatcccatcattccacaaaatggtttgcgagttttctcacaaaatattacaac 34936021  T
Q  212 ttt 214  Q
    |||    
T  34936022 ttt 34936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 5766579 - 5766663
Alignment:
Q  151 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  5766579 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 5766663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 18318650 - 18318698
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttc 232  Q
    |||||| ||||| | |||||||||||||||| ||||||||||| |||||    
T  18318650 tgcgagttttctgcaaaaatattacaactttgacctcactcacatgttc 18318698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 361 - 472
Target Start/End: Original strand, 28673460 - 28673571
Alignment:
Q  361 tttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttct 460  Q
    |||||||| ||||||||||||||  |||| |||||||||||  |||||||||||||||||||  |||||| ||| | ||| | || |||||||| |||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaacaactgtaagcttct 28673559  T
Q  461 cgaagaggttat 472  Q
    ||||||||||||    
T  28673560 cgaagaggttat 28673571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 28695700 - 28695821
Alignment:
Q  351 gtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaact 450  Q
    |||||| || |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||||||| |  | |||| ||| ||||| | || ||||    
T  28695700 gtagaggctatttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaact 28695799  T
Q  451 gtaaacttctcgaagaggttat 472  Q
    | || |||||||||||||||||    
T  28695800 gcaagcttctcgaagaggttat 28695821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 41900484 - 41900572
Alignment:
Q  167 catccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 255  Q
    |||||| ||| |||| || |||||||| ||| |||| ||||||||||| ||||| |||||||||| | ||||| ||| |||||||||||    
T  41900484 catccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaaatgcattatatcaatagca 41900572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 448
Target Start/End: Original strand, 41886774 - 41886869
Alignment:
Q  353 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 448  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  41886774 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 41886869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 28532877 - 28532813
Alignment:
Q  169 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 233  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  28532877 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 28532813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 29021675 - 29021555
Alignment:
Q  352 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 451  Q
    ||||| || |||||||| ||||||| ||||||  |||| || |||||||| |||||  ||| |||||||||  |||||| ||| ||||  | || |||||    
T  29021675 tagaggctatttcattgtcactttttaaactccgcaaggttgatctctctcgtcattgctatatcaacgaccaatcacttttccactttataaacaactg 29021576  T
Q  452 taaacttctcgaagaggttat 472  Q
    ||| ||||||||||| |||||    
T  29021575 taagcttctcgaagaagttat 29021555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 32268564 - 32268513
Alignment:
Q  204 attacaactttaacctcactcacttgttccaaaatggattctatcaatagca 255  Q
    ||||||||||| ||||| |||||||||||||||||| | | |||||||||||    
T  32268564 attacaactttgacctctctcacttgttccaaaatgcaatatatcaatagca 32268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 127 - 301
Target Start/End: Original strand, 13469599 - 13469773
Alignment:
Q  127 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 226  Q
    |||||||| | ||||||||| || | ||||||||||||||  | ||||||| ||| || ||||||||||||||||| | ||||||  | ||||| |||||    
T  13469599 cattgaacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcac 13469698  T
Q  227 ttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaact 301  Q
    ||||||| | || | |  | ||||||||| |||| |||| || ||||| |||||||| || ||||||||||||||    
T  13469699 ttgttcccacattgctaatttcaatagcagtgacctgttccttattgcagaatgttttccgttgcttgaagaact 13469773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 111 - 307
Target Start/End: Original strand, 51113131 - 51113327
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| ||||||||||||| || || |||||  |||| |||||| ||  ||  || ||  ||| ||||||||||||||||||  ||||||||||||    
T  51113131 gaaatctctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaa 51113230  T
Q  211 ctttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    || | ||||| |||||||||||  | ||   || |||||| ||||  ||||||||  |||| |||||||| ||||||||  ||||||||||||||||    
T  51113231 ctctgacctctctcacttgttcgcacataagttgtatcaacagcaccgacttgttggtcatcgctgaatgcttccctttatttgaagaactcgacct 51113327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 1657597 - 1657474
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  1657597 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 1657498  T
Q  263 gttactcattgctgaatgtttccc 286  Q
    ||| ||||||||||| ||||||||    
T  1657497 gttcctcattgctgattgtttccc 1657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 51120658 - 51120707
Alignment:
Q  179 tggattgcgagctttctcccaaaatattacaactttaacctcactcactt 228  Q
    |||||||||||||||||| |||||| |||||||||| || ||||||||||    
T  51120658 tggattgcgagctttctctcaaaatgttacaactttgacttcactcactt 51120707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 51763325 - 51763446
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||||||| ||||||||||||| || ||||||||| || | ||||| || |  ||| | ||| ||| ||| ||||||| ||| || ||||| ||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  212 tttaacctcactcacttgttcc 233  Q
    ||| || || ||||||||||||    
T  51763425 tttgacatctctcacttgttcc 51763446  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 51763487 - 51763529
Alignment:
Q  265 tactcattgctgaatgtttccctttgcttgaagaactcgacct 307  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  51763487 tactcattgcggaatgtttcccattgctcgaagaactcgacct 51763529  T

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Target: scaffold1155 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 1820 - 1923
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  1820 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 1919  T
Q  211 cttt 214  Q
    ||||    
T  1920 cttt 1923  T

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Target: scaffold0345 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 8396 - 8293
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  8396 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 8297  T
Q  211 cttt 214  Q
    ||||    
T  8296 cttt 8293  T

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Target: scaffold0105 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 30583 - 30686
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  30583 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 30682  T
Q  211 cttt 214  Q
    ||||    
T  30683 cttt 30686  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 1036587 - 1036669
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  1036587 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

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