View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19152_low_10 (Length: 361)
Name: NF19152_low_10
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 49 - 344
Target Start/End: Original strand, 39780554 - 39780849
Alignment:
| Q |
49 |
gtacagtacttgaatcacctattaatagtcctttgttaaatgtttcttcaccttcagctgataagcctcctttgcctagaaaatcattcctaaactcagt |
148 |
Q |
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| T |
39780554 |
gtacagtacttgaatcacctattaatagtcctttgttaaacgtttcttcaccttcagctgataagcctcctttgcctagaaaatcattcctaaactcagt |
39780653 |
T |
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| Q |
149 |
ttccagaaaacttggccgtctttctccttttcaacgtgctcatcctgtcatacgtcccaaagatcgcatacaactagacaagattcgacgctactccata |
248 |
Q |
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| T |
39780654 |
ttccagaaaacttggccgtctttctccttttcaacgtgctcatcctgtcatacgtcccaaagatcgcatacaactagacaagattcgacgctactccata |
39780753 |
T |
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| Q |
249 |
tcctgattttgtgcaagatgtttttatcttttttggaattacaaatgatagtatgttagtattattatgttgtgcgtgttattatgcatgggaaac |
344 |
Q |
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| T |
39780754 |
tcctgattttgtgcaagatgtttttatcttttttggaattacaagtgatagtatgttagtattattatgttgtgcgtgttattatgcatgggaaac |
39780849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 39780874 - 39780913
Alignment:
| Q |
273 |
tatcttttttggaattacaaatgatagtatgttagtatta |
312 |
Q |
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| T |
39780874 |
tatcttttttggaattacaaacgatagtatgttagtatta |
39780913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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