View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19152_low_11 (Length: 327)
Name: NF19152_low_11
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 2524004 - 2523843
Alignment:
| Q |
18 |
aggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcctgtgccatcaattgtgagaccatttacatattggatcctaatccaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2524004 |
aggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcctgtgccatcaattgtgagaccatttacatattggatcctaatccaac |
2523905 |
T |
|
| Q |
118 |
ccaacccagatttccatgatttcttaggaggtgcaattattttcccttgaatctacaagtgc |
179 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2523904 |
ccaaccctgatttccatgatttcttaggaggtgcaattattttcccttgaatctacaagtgc |
2523843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 2523815 - 2523703
Alignment:
| Q |
207 |
tgtccgttacagaattgatgctacaatgcatgaatttacaaatagagatggttggaataccccatactttgttttctcaannnnnnnnnnattgttcatg |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2523815 |
tgtccgttacaga-ttgatgctacaatgcatgaatttacaaatagagatggttggaataccccatactttgttttctcaattttttttttattgttcatg |
2523717 |
T |
|
| Q |
307 |
ctaactagtgtctc |
320 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2523716 |
ctaactagtgtctc |
2523703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 11659126 - 11659217
Alignment:
| Q |
28 |
tgcatgaccaccatgtagaaccatagccgtcaattcctcctcc---tgtgccatcaattgtgagaccatttacatattggatcctaatccaa |
116 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
11659126 |
tgcatggccaccatgtagaaccattgccgtcgattcctcctccgcctgtgccatcaattgtgacaccgtttacatattggatcttaatccaa |
11659217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 32923409 - 32923310
Alignment:
| Q |
19 |
ggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcc---tgtgccatcaattgtgagaccatttacatattggatcctaatcca |
115 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32923409 |
ggcaacttttgcattgccaccaagtagaaccatggccgttaattcttcctctgcgtgtgccatcaattgtgagaccatttacatattggat-ctaatcca |
32923311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University