View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19152_low_12 (Length: 317)

Name: NF19152_low_12
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19152_low_12
NF19152_low_12
[»] chr4 (8 HSPs)
chr4 (18-139)||(36615534-36615655)
chr4 (228-305)||(36615362-36615439)
chr4 (229-305)||(30950186-30950262)
chr4 (229-305)||(48697134-48697210)
chr4 (229-305)||(48701824-48701900)
chr4 (229-297)||(30945488-30945556)
chr4 (229-297)||(42266141-42266209)
chr4 (229-297)||(42270860-42270928)
[»] chr3 (5 HSPs)
chr3 (239-305)||(24659139-24659205)
chr3 (228-305)||(54546120-54546197)
chr3 (229-305)||(2817266-2817342)
chr3 (229-305)||(5823278-5823354)
chr3 (229-305)||(5818516-5818592)
[»] chr7 (3 HSPs)
chr7 (240-303)||(8139969-8140032)
chr7 (228-303)||(30235259-30235334)
chr7 (229-303)||(16183636-16183710)
[»] chr2 (3 HSPs)
chr2 (229-305)||(830373-830449)
chr2 (229-305)||(825717-825793)
chr2 (229-297)||(5198666-5198734)
[»] scaffold0074 (1 HSPs)
scaffold0074 (239-305)||(27229-27295)
[»] chr8 (2 HSPs)
chr8 (229-305)||(9439375-9439451)
chr8 (229-305)||(9444095-9444171)
[»] chr6 (5 HSPs)
chr6 (229-305)||(1234939-1235015)
chr6 (229-305)||(26976134-26976210)
chr6 (229-305)||(27878712-27878788)
chr6 (241-305)||(18968127-18968191)
chr6 (229-305)||(27873993-27874069)
[»] chr5 (3 HSPs)
chr5 (229-305)||(34360194-34360270)
chr5 (229-305)||(41718648-41718724)
chr5 (229-305)||(41723374-41723450)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 36615655 - 36615534
Alignment:
Q  18 acatgtggcattacgtaaattttaatataacattttataaatcaattattaaaacttaaaaggattttcgaaaggacaaacttacatgtagttatatatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36615655 acatgtggcattacgtaaattttaatataacattttataaatcaattattaaaacttaaaaggattttcgaaaggacaaacttacatgtagttatatatg 36615556  T
Q  118 tgcagtttttgttgttcctccc 139  Q
    ||||||||||||||||||||||    
T  36615555 tgcagtttttgttgttcctccc 36615534  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 36615439 - 36615362
Alignment:
Q  228 taaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36615439 taaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtaccta 36615362  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 30950262 - 30950186
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| ||| |||||||| ||| | ||||||||||| ||||||| |||||||    
T  30950262 aaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtaccta 30950186  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 48697210 - 48697134
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  48697210 aaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctggtaccta 48697134  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 48701900 - 48701824
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  48701900 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 48701824  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 30945556 - 30945488
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactct 297  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| |||||||    
T  30945556 aaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactct 30945488  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 42266141 - 42266209
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactct 297  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| |||||||    
T  42266141 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 42266209  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 42270860 - 42270928
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactct 297  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| |||||||    
T  42270860 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 42270928  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 24659205 - 24659139
Alignment:
Q  239 tgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||||||| |||||||||||| | |||||||| ||||| ||||||||||||||||||| |||||||    
T  24659205 tgttcagttcctcttttctcatctcttattttagctgtgtgataatattttattactctggtaccta 24659139  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 54546120 - 54546197
Alignment:
Q  228 taaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    |||||| ||||||||||||| |||||||||||| | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  54546120 taaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtaccta 54546197  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 2817342 - 2817266
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  2817342 aaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctggtaccta 2817266  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 5823354 - 5823278
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  5823354 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 5823278  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 5818592 - 5818516
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | ||||||||  || | ||||||||||| ||||||| |||||||    
T  5818592 aaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggtaccta 5818516  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 8140032 - 8139969
Alignment:
Q  240 gttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtacc 303  Q
    ||||||||||||||||||||| | |||||||| ||||| ||||||||||| ||||||| |||||    
T  8140032 gttcagtttctcttttctcatctcttattttagctgtgtgataatattttgttactctggtacc 8139969  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 30235259 - 30235334
Alignment:
Q  228 taaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtacc 303  Q
    |||||| ||| ||||||||| |||||||||||| |||||||||| |||||  ||||||||||  |||||| |||||    
T  30235259 taaatattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacc 30235334  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 16183710 - 16183636
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtacc 303  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||    
T  16183710 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 16183636  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 830373 - 830449
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||||||| | ||||||||||| ||||||| |||||||    
T  830373 aaatattgtgtgttcagttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtaccta 830449  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 825717 - 825793
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  825717 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 825793  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 5198734 - 5198666
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactct 297  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| |||||||    
T  5198734 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 5198666  T

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Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 27295 - 27229
Alignment:
Q  239 tgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    |||||||||||||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  27295 tgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 27229  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 9439451 - 9439375
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  9439451 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 9439375  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 9444171 - 9444095
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  9444171 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 9444095  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 1234939 - 1235015
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  1234939 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 1235015  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 26976210 - 26976134
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  26976210 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 26976134  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 27878788 - 27878712
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  27878788 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 27878712  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 18968127 - 18968191
Alignment:
Q  241 ttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  18968127 ttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 18968191  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 27874069 - 27873993
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | ||||||||  || | ||||||||||| ||||||| |||||||    
T  27874069 aaatattgtgtgttcagttcctcttttctcttctcttattttagatgcgtgataatattttgttactctggtaccta 27873993  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 34360194 - 34360270
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  34360194 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 34360270  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 41718648 - 41718724
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  41718648 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 41718724  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 41723374 - 41723450
Alignment:
Q  229 aaataatgtatgttcagtttctcttttctcatattttattttaactgtgcgataatattttattactctagtaccta 305  Q
    ||||| ||| ||||||||| |||||||||| | | |||||||| ||| | ||||||||||| ||||||| |||||||    
T  41723374 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 41723450  T

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