View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19152_low_16 (Length: 255)
Name: NF19152_low_16
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 43226293 - 43226208
Alignment:
| Q |
18 |
tgttttgaataagcggggtagcttcttctccatcaaaagaggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
103 |
Q |
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| T |
43226293 |
tgttttgaataagcggggtagcttcttctccatcaaaagaggtaatttgagagttgttatatttttggtcaaaaccaaaggaatat |
43226208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 43226124 - 43226065
Alignment:
| Q |
102 |
atccttacctttaaattagtggtttcataatttgatttagatacgaaacacttgtactag |
161 |
Q |
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| T |
43226124 |
atccttacctttaatttagtgctttcataatttgatttagatacgaaacacttttactag |
43226065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 43242061 - 43242008
Alignment:
| Q |
18 |
tgttttgaataagcggggtagcttcttctccatcaaaagaggtaattcgagagt |
71 |
Q |
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| T |
43242061 |
tgttttgaataagcgggatagcttcttctgcatcaaaagaggtaatttgagagt |
43242008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 43242007 - 43241958
Alignment:
| Q |
54 |
aagaggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
103 |
Q |
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| T |
43242007 |
aagaggtaatttgagagttgttatgtttatggtcaaaaccaaagaaatat |
43241958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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