View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19152_low_18 (Length: 248)

Name: NF19152_low_18
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19152_low_18
NF19152_low_18
[»] chr3 (3 HSPs)
chr3 (1-231)||(38249249-38249479)
chr3 (2-227)||(38254370-38254595)
chr3 (3-85)||(7861769-7861850)
[»] chr6 (5 HSPs)
chr6 (2-219)||(12036589-12036806)
chr6 (2-227)||(20656895-20657121)
chr6 (2-221)||(12035918-12036137)
chr6 (2-179)||(20655996-20656174)
chr6 (100-189)||(302489-302578)
[»] chr2 (2 HSPs)
chr2 (2-225)||(22177319-22177542)
chr2 (2-142)||(22169127-22169267)
[»] chr1 (2 HSPs)
chr1 (2-230)||(4355666-4355894)
chr1 (2-230)||(4675018-4675246)
[»] chr8 (1 HSPs)
chr8 (123-175)||(26816413-26816465)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38249479 - 38249249
Alignment:
Q  1 ttatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  38249479 ttatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccgttctctatattataagacattatatatggcttataaaatggactag 38249380  T
Q  101 attttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38249379 attttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacc 38249280  T
Q  201 actttccattgttgtccacacaccttccttg 231  Q
    |||||||||||||||||||||||||||||||    
T  38249279 actttccattgttgtccacacaccttccttg 38249249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 38254595 - 38254370
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38254595 tatgacaaccttttatagcttcccttcacaacttaatcatggttgaaattccattctctagattataagacattatatatggcttataaaaaggactaga 38254496  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacca 201  Q
    | |||||| ||||| | ||| |||||||||||||||||||| ||| |||||||| ||| |||||||||||| |||||| | ||||| |  |||||||| |    
T  38254495 tcttgcaatgtaagaagcgcaatctgagataaaatgaaggcatcccttgtgaaatacatgcatgtcaaattccatgttcctaccactaggtgaaaaacta 38254396  T
Q  202 ctttccattgttgtccacacaccttc 227  Q
      || ||||||||||||||| |||||    
T  38254395 tgtttcattgttgtccacacgccttc 38254370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 7861850 - 7861769
Alignment:
Q  3 atgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggct 85  Q
    |||||||||||||||||||||| | ||||||||||||||| || | ||| || ||||||||| |||||| |||||||||||||    
T  7861850 atgacaaccttttatagcttcc-taggcaacttaagcataatttatatttcactctctagatcataagatattatatatggct 7861769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 12036806 - 12036589
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  12036806 tatgacaaccttttacagcttcccttgacaacttaagcatggttgagattccattctctagattataagacattgtatatggcttataaaaaggactaga 12036707  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacca 201  Q
    |||||||||||||| ||| | |||||||||||||||||| | ||| |||||||| ||||||||||||||||||||||| | |||||||  |||||||| |    
T  12036706 ttttgcaaagtaagaatcacaatctgagataaaatgaagacatcccttgtgaaatacaggcatgtcaaatttcatgttcctaccaccaggtgaaaaacta 12036607  T
Q  202 ctttccattgttgtccac 219  Q
     ||| |||||||||||||    
T  12036606 tttttcattgttgtccac 12036589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 20657121 - 20656895
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  20657121 tatgacaaccttttacagcttcccttggcaacctaagcatagttgagattccattctctagattataagacattatatatggcttataaaaaggcctaga 20657022  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacca 201  Q
    |||||||||||||| |  || |||||||||||||||||| | ||| |||||||| ||| |||||||||||| |||||| | |||||||  |||| ||| |    
T  20657021 ttttgcaaagtaagaagtgcaatctgagataaaatgaagacatcccttgtgaaatacatgcatgtcaaattccatgttcctaccaccaggtgaacaacta 20656922  T
Q  202 -ctttccattgttgtccacacaccttc 227  Q
      ||| |||||||||||||||||||||    
T  20656921 ttttttcattgttgtccacacaccttc 20656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 12035918 - 12036137
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    |||||| |||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  12035918 tatgaccaccttttacaacttcccttggcaacctaagcatagttgagatttcattctctagattataagacattatatatagcttataaaaaggactaga 12036017  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacca 201  Q
    ||||||||||||||   ||| |||||||||||||||||| | | | |||||||| ||||||||||||||||||||||| | |||||||  |||||||| |    
T  12036018 ttttgcaaagtaagaggcgcaatctgagataaaatgaagacattccttgtgaaatacaggcatgtcaaatttcatgttcctaccaccaggtgaaaaacta 12036117  T
Q  202 ctttccattgttgtccacac 221  Q
     ||| |||||||||||||||    
T  12036118 tttttcattgttgtccacac 12036137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 20655996 - 20656174
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattc-cattctctagattataagacattatatatggcttataaaatggactag 100  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  20655996 tatgacaaccttttacaacttcccttggcaacttaagcatagttgagattctcattctctagattataagacattacatatggcttataaaaaggactag 20656095  T
Q  101 attttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtt 179  Q
    |||||||||||| || | ||| || ||||||||||||||| | ||| |||||||| |||||||||||||||||||||||    
T  20656096 attttgcaaagtcagaagcgcaatttgagataaaatgaagacatcccttgtgaaatacaggcatgtcaaatttcatgtt 20656174  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 302489 - 302578
Alignment:
Q  100 gattttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccacca 189  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| | |||||||    
T  302489 gattttgcaaagtaaggagcactatctgagataaaacgaaggcctcccttgtgaaatacaggcatgtcaaatttcatgttcctaccacca 302578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 22177542 - 22177319
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  22177542 tatgacaaccttttatagcttcccttggcaacttaaacatggttgaaattccattctctagattataagacattatatatggcttataaaaaggactgga 22177443  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccaccacatgaaaaacca 201  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||| |||||||| | |||||||||||||| |||||| | |||||||  ||||||||      
T  22177442 ttttgcaaagtaagaagcgcaatctgagataaaatgaaggcatcccttgtgaaataaaggcatgtcaaattccatgttcctaccaccaggtgaaaaactg 22177343  T
Q  202 ctttccattgttgtccacacacct 225  Q
     ||| ||||||||||| |||||||    
T  22177342 tttttcattgttgtccgcacacct 22177319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 22169267 - 22169127
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    ||||||||||||||||||||||||||||||||||||  || ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  22169267 tatgacaaccttttatagcttcccttggcaacttaattatggttgcaattccattctctagattataagacattatatatggcttataaaaaggactgga 22169168  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggc 142  Q
    ||||||| |||||| | ||| ||||||||||||||||||||    
T  22169167 ttttgcatagtaagaagcgcaatctgagataaaatgaaggc 22169127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 4355894 - 4355666
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    |||| |||||| | || ||||| ||||||||| | ||||| |||||| |||||||||| |||| |||||||||||| |||||||| ||||| || ||||     
T  4355894 tatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagatgataagacattatgtatggcttgtaaaaagggctagg 4355795  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccacca-catgaaaaacc 200  Q
    ||||||||| ||| ||   | ||||||||||| || || | ||   |||||||||||   |||||| || ||||||||||  |||||| || |  |||||    
T  4355794 ttttgcaaaataatgagaacaatctgagataacattaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaag-gaaacc 4355696  T
Q  201 actttccattgttgtccacacaccttcctt 230  Q
    | | ||||||||| ||||||||||||||||    
T  4355695 attatccattgttttccacacaccttcctt 4355666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 4675018 - 4675246
Alignment:
Q  2 tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccattctctagattataagacattatatatggcttataaaatggactaga 101  Q
    |||| |||||| | || ||||| ||||||||| | ||||| |||||| |||||||||| |||| |||||||||||| |||||||| ||||| || ||||     
T  4675018 tatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagatgataagacattatgtatggcttgtaaaaagggctagg 4675117  T
Q  102 ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccacca-catgaaaaacc 200  Q
    ||||||||| ||| ||   | ||||||||||| || || | ||   ||||||||||    |||||| || ||||||||||  |||||| || |  |||||    
T  4675118 ttttgcaaaataatgagaacaatctgagataacataaatggctttgttgtgaaacaagttcatgtcgaagttcatgtttcttccaccagcaag-gaaacc 4675216  T
Q  201 actttccattgttgtccacacaccttcctt 230  Q
    | | ||||||||| ||||||||||||||||    
T  4675217 attatccattgttttccacacaccttcctt 4675246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 26816465 - 26816413
Alignment:
Q  123 atctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttca 175  Q
    ||||||||| || |||| | |||| ||||||||||| ||||||||||||||||    
T  26816465 atctgagatgaagtgaacggctccattgtgaaacactggcatgtcaaatttca 26816413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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