View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19152_low_2 (Length: 655)
Name: NF19152_low_2
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 52108658 - 52109297
Alignment:
| Q |
1 |
ataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacactacaacccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108658 |
ataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacactacaacccaaa |
52108757 |
T |
|
| Q |
101 |
atcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108758 |
atcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
52108857 |
T |
|
| Q |
201 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108858 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgt |
52108957 |
T |
|
| Q |
301 |
aacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaattgtttggggatttgga |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52108958 |
aacagtaggcatctcgtattccggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaa---tttggggatttgga |
52109054 |
T |
|
| Q |
401 |
agtggatttggatttaattggtgagaaattagcttagaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttga |
500 |
Q |
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| T |
52109055 |
agtggatttggatttaattggtgagaaattagcttggaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttga |
52109154 |
T |
|
| Q |
501 |
cagtggaagtgaagcactgagtgcagaaatatggagtgtggtgaaaatgaagaaggtggcttcaagtgtgaagaaaacagtgttcctaaagaaattttga |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52109155 |
cagtggaagtgaagcactgagtgcagaaatatggagtgtgatgaaaatgaagaaggtgacttcaagtgtgaagaaaacagtgttcctaaagaaattttga |
52109254 |
T |
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| Q |
601 |
ggtttcaaaagagtaatgaattaagcataagtcaccacaggtt |
643 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
52109255 |
ggtttcaaaagagtaatgaattaagcataattcaccaccggtt |
52109297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 44519931 - 44520314
Alignment:
| Q |
1 |
ataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacactacaacccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
44519931 |
ataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacactacaacccaaa |
44520029 |
T |
|
| Q |
101 |
atcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520030 |
attaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
44520129 |
T |
|
| Q |
201 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44520130 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcacaccccatgt |
44520229 |
T |
|
| Q |
301 |
aacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaatt |
385 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
44520230 |
aacagtaggcatctcgtattcaggaaatttggaatcttgggttccatagagattgaagaataaaaccctaaaattgtttgaaatt |
44520314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 448 - 535
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
448 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
535 |
Q |
| |
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|||||||||||| | |||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||||| |||||| |
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| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
392 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
443 |
Q |
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|||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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