View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19152_low_3 (Length: 534)

Name: NF19152_low_3
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19152_low_3
NF19152_low_3
[»] chr2 (6 HSPs)
chr2 (56-416)||(6489583-6489964)
chr2 (313-517)||(44686117-44686322)
chr2 (313-461)||(27648324-27648473)
chr2 (313-516)||(36338893-36339097)
chr2 (10-105)||(6479921-6480015)
chr2 (370-461)||(26690605-26690696)
[»] chr6 (4 HSPs)
chr6 (323-516)||(352987-353182)
chr6 (313-517)||(14802751-14802960)
chr6 (405-517)||(31405620-31405732)
chr6 (343-517)||(12273593-12273766)
[»] chr1 (2 HSPs)
chr1 (343-517)||(25588698-25588871)
chr1 (313-503)||(47833780-47833971)
[»] chr3 (3 HSPs)
chr3 (340-503)||(53837501-53837664)
chr3 (340-517)||(24734248-24734425)
chr3 (342-503)||(53833903-53834064)
[»] chr5 (4 HSPs)
chr5 (310-462)||(17895598-17895752)
chr5 (313-499)||(33827468-33827655)
chr5 (310-414)||(17895438-17895545)
chr5 (387-461)||(11128885-11128959)
[»] chr7 (2 HSPs)
chr7 (302-461)||(38787033-38787191)
chr7 (351-417)||(4648282-4648348)
[»] chr8 (2 HSPs)
chr8 (323-460)||(15051496-15051634)
chr8 (343-461)||(24542662-24542780)
[»] chr4 (1 HSPs)
chr4 (448-516)||(54572967-54573036)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 56 - 416
Target Start/End: Original strand, 6489583 - 6489964
Alignment:
Q  56 taggctagtcaaatatatagaaggtgaattcattcataaaggctgccgatacat---------------------aaacagaaccatgaccaaatatata 134  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||                     ||| |||||||||||||||||||||    
T  6489583 taggctagtcaaatatataaaaggtgaattcattcataaaggctgccgatacatgtacaatgttatagatatatgaaagagaaccatgaccaaatatata 6489682  T
Q  135 acctttccactaaccctttggtttattcccattaacctattaactagaatagtaactttccactaacttttccactaaacgttgttaactgccaccacca 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6489683 acctttccactaaccctttggtttattcccattaacctattaactagaataataactttccactaacttttccactaaacgttgttaactgccaccacca 6489782  T
Q  235 gtaataataacttcccatttccactaacnnnnnnncttgcttcaattttgtctataataacaaatagcaaagataaattaagtttccatgagcatccaaa 334  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6489783 gtaataataacttcccatttccactaactttttttcttgcttcaattttgtctataataacaaataacaaagataaattaagtttccatgagcatccaaa 6489882  T
Q  335 aatggttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagac 416  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  6489883 aatggttttgagaccctgctaattcatgtgcggcgctagcaaaaggtgaccgttgtatcctcgagagtactagctgtgagac 6489964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 313 - 517
Target Start/End: Complemental strand, 44686322 - 44686117
Alignment:
Q  313 taagtttccatgagcatccaaaaatggttc-tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgt 411  Q
    |||||| |||| |||||||| || || ||| ||||||| ||||||| || ||||||  ||||||| ||| |||||||||||||| ||||||| ||||| |    
T  44686322 taagttcccataagcatccataagtgattcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctat 44686223  T
Q  412 gagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattct 511  Q
    |||||||||| |||||||||| ||||||| |||| |||||||||||||||| | || | ||  ||| |||| ||||||||||||| ||||||||||||||    
T  44686222 gagacctatcgcatcggataacttatccgaggtggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttttctattct 44686123  T
Q  512 ctattt 517  Q
    ||||||    
T  44686122 ctattt 44686117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 313 - 461
Target Start/End: Original strand, 27648324 - 27648473
Alignment:
Q  313 taagtttccatgagcatccaaaaatggttct-gagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgt 411  Q
    |||||| ||||||||||||| || ||||| | |||||| || |||| |||||||||  ||||||| ||| |||||||||||||| ||||||| ||||| |    
T  27648324 taagttcccatgagcatccataagtggtttttgagaccttgttaatccatgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctat 27648423  T
Q  412 gagacctatcacatcggataatttatccgtggtgacgaaatactcttaag 461  Q
    |||||||||| |||||||||||||||||  |||| ||||||||| |||||    
T  27648424 gagacctatcgcatcggataatttatccaaggtggcgaaatacttttaag 27648473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 516
Target Start/End: Complemental strand, 36339097 - 36338893
Alignment:
Q  313 taagtttccatgagcatccaaaaatggtt-ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgt 411  Q
    ||||||||||||||||| ||||| ||||| |||||||| | ||||||||  |||||  ||||||| || ||||||||||||||| ||||||||||||       
T  36339097 taagtttccatgagcattcaaaagtggtttctgagaccttactaattcacatgcggtgctagcaagaactgactgttgtatcctggagagtactagccac 36338998  T
Q  412 gagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttc-tattc 510  Q
    |||| |||   |||||| |||  ||| || | || |||||||||||||| | | || ||| | |||||||| |||||||| ||||||||||| | |||||    
T  36338997 gagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaac-cagtgcttcgtgcacgcctcagtcaatattcgataagtttacatattc 36338899  T
Q  511 tctatt 516  Q
    ||||||    
T  36338898 tctatt 36338893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 6480015 - 6479921
Alignment:
Q  10 aagaatattagtgaattcttaaaagctaagtgatgtatnnnnnnnntaggctagtcaaatatatagaaggtgaattcattcataaaggctgccgat 105  Q
    |||||||||| ||||||||| |||||||||||||||||        |||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  6480015 aagaatattattgaattcttgaaagctaagtgatgtataaaaaaa-tagggtagttaaatatatagaagatgaattcattcataaaggctgccgat 6479921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 461
Target Start/End: Complemental strand, 26690696 - 26690605
Alignment:
Q  370 ctagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaag 461  Q
    |||||||||| ||| ||||||||  | ||||||||||||| ||||||| |   ||||||||||  ||||| |||||  ||||||||||||||    
T  26690696 ctagcaaaaaatgattgttgtattatagagagtactagctatgagaccaactgcatcggataacctatccatggtggtgaaatactcttaag 26690605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 323 - 516
Target Start/End: Original strand, 352987 - 353182
Alignment:
Q  323 tgagcatccaaaaatggttc-tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatc 421  Q
    ||||||||||||| || ||  ||| ||| |||||||||| |||||  |||||||| |||||| | ||||||||| ||||||| |||||||||||||||||    
T  352987 tgagcatccaaaagtgtttagtgacaccttgctaattcacgtgcgatactagcaagaagtgattattgtatcctggagagtattagctgtgagacctatc 353086  T
Q  422 acatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttc-tattctctatt 516  Q
     ||||||||||| ||| || |||| |||||||||||||||| | || ||| | |||||||| |||||||||||||| ||||| | |||||||||||    
T  353087 gcatcggataatctattcggggtggcgaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctatt 353182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 517
Target Start/End: Original strand, 14802751 - 14802960
Alignment:
Q  313 taagtttccatgagcatccaaaaatggttc-tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgt 411  Q
    ||||||||||||||||||||||  || ||| ||| ||| |||||||||| |||| |  ||||||| |||||  ||||||||||| ||||||| ||||| |    
T  14802751 taagtttccatgagcatccaaag-tgtttcctgaaaccttgctaattcacgtgcagtgctagcaagaagtggttgttgtatcctggagagtattagctat 14802849  T
Q  412 gagacctatcacatcggataatttatccgtggtgacgaa----atactcttaagctcggtactttgagcacgccttagtcaataatcgataag-ttttct 506  Q
     ||| ||||| ||||| |||| ||||  | |||| | ||    |||||||||| | | ||  |||| ||| |||| || |||||||||||||| ||||||    
T  14802850 cagatctatcgcatcgaataacttatttgaggtggcaaaatatatactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagtttttct 14802949  T
Q  507 attctctattt 517  Q
    |||||||||||    
T  14802950 attctctattt 14802960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 517
Target Start/End: Complemental strand, 31405732 - 31405620
Alignment:
Q  405 tagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagtttt 504  Q
    ||||| |||||||||   ||||||||||| ||| ||  ||| ||||||||||||||||||  | | ||  ||||| || | |||||||||||||| ||||    
T  31405732 tagctatgagacctactgcatcggataatctattcggagtggcgaaatactcttaagctcaatgcattttgcacgtctcactcaataatcgataaatttt 31405633  T
Q  505 ctattctctattt 517  Q
    |||||||||||||    
T  31405632 ctattctctattt 31405620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 517
Target Start/End: Original strand, 12273593 - 12273766
Alignment:
Q  343 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 442  Q
    ||||||| ||||||||||  || ||  ||||||| |||||| |||||||||||  |||||| || || ||||||||||| ||| || | ||  ||||| |    
T  12273593 tgagaccttgctaattcacatgtggtgctagcaagaagtgattgttgtatcctaaagagtattaactatgagacctatcgcattgggtgatccatccggg 12273692  T
Q  443 gtgacgaaatactcttaagctcggtactttgagcacgccttagtcaata--atcgataagttttctattctctattt 517  Q
     || | |||||||||||||| |||| | ||  |||||||| | ||||||  ||||||||| ||||||||||||||||    
T  12273693 atggcaaaatactcttaagcccggtgcatt--gcacgcctcaatcaataatatcgataag-tttctattctctattt 12273766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 343 - 517
Target Start/End: Original strand, 25588698 - 25588871
Alignment:
Q  343 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 442  Q
    ||||||| |||||||||| ||||||  ||||||| ||||||| || |||| || ||||||||||||| ||||| ||| |  |||| ||||| ||| ||||    
T  25588698 tgagaccttgctaattcacgtgcggtgctagcaagaagtgaccgt-gtattctggagagtactagctatgagatctaccgtatcgaataatctattcgtg 25588796  T
Q  443 gtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattctctattt 517  Q
    ||| ||||||||||||||||   ||||| || |||| ||||||||||||||||||||||||||||||||||||||    
T  25588797 gtggcgaaatactcttaagcaaagtactatgtgcacaccttagtcaataatcgataagttttctattctctattt 25588871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 503
Target Start/End: Original strand, 47833780 - 47833971
Alignment:
Q  313 taagtttccatgagcatccaaaaatggtt-ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgt 411  Q
    |||||| ||||||||||||| || ||||| ||||||||  | |||| || ||||||  ||||||| ||| ||||||||||| || ||||||| ||||| |    
T  47833780 taagttcccatgagcatccataagtggtttctgagacctcgttaatccacgtgcggtgctagcaagaagcgactgttgtattctggagagtattagctat 47833879  T
Q  412 gagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttt 503  Q
    |||||||||  |||||||| ||| ||||| |||| |||||||||||||||| |  | |||   ||| |||| ||||||||||||||||||||    
T  47833880 gagacctattgcatcggatgattcatccggggtggcgaaatactcttaagcccaatgcttcatgcatgcctcagtcaataatcgataagttt 47833971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 340 - 503
Target Start/End: Complemental strand, 53837664 - 53837501
Alignment:
Q  340 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 439  Q
    |||||||||| ||||||||||| |||||  |||||||||||||| |||||||||||  |||||| || || ||||| ||||| |||||||| ||| ||||    
T  53837664 ttctgagaccttgctaattcatatgcggtgctagcaaaaagtgattgttgtatcctgcagagtattaactatgagatctatcgcatcggatgattcatcc 53837565  T
Q  440 gtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttt 503  Q
    | |||| |||||||||||||||| |  |||||   |||||||| ||||||||||||||||||||    
T  53837564 gaggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagttt 53837501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 340 - 517
Target Start/End: Complemental strand, 24734425 - 24734248
Alignment:
Q  340 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 439  Q
    |||||||||| ||||||||||  |||||  |||| || | |||||||||||||||| ||||||| ||||| |||||||||   |||| |||||  ||||     
T  24734425 ttctgagaccttgctaattcacatgcggtgctagtaagatgtgactgttgtatcctggagagtattagctatgagacctactgcatcagataacctatct 24734326  T
Q  440 gtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattctctattt 517  Q
    | |||| |||| |||||||||| ||||| ||| | |||| ||| |||||||||| |||||||||||||||||||||||    
T  24734325 ggggtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttttctattctctattt 24734248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 503
Target Start/End: Complemental strand, 53834064 - 53833903
Alignment:
Q  342 ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgt 441  Q
    |||||||| ||||||||||  |||||  |||| || |||||| |||||||||||  |||||| ||||| ||||||||||| |||||| | |||||||||     
T  53834064 ctgagaccttgctaattcacatgcggtgctaggaagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcgggttatttatccgg 53833965  T
Q  442 ggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttt 503  Q
    | || | |||||||||| ||| | || |||   |||||||| |  |||||||||||||||||    
T  53833964 gatggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagttt 53833903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 462
Target Start/End: Original strand, 17895598 - 17895752
Alignment:
Q  310 aattaagtttccatgagcatccaaaaa--tggttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactag 407  Q
    ||||||||| |  ||||||||||||||  || || ||||||| ||||| |||||||||||   |||||| |||||| ||||||||||| |||||||||||    
T  17895598 aattaagttcctttgagcatccaaaaagttgtttttgagaccttgctagttcatgtgcggtgttagcaagaagtgattgttgtatcctggagagtactag 17895697  T
Q  408 ctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaagc 462  Q
    |||||||||| |  | | ||||||| | |||||||| | | ||||||||||||||    
T  17895698 ctgtgagaccaactataccggataactaatccgtggcggcaaaatactcttaagc 17895752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 499
Target Start/End: Original strand, 33827468 - 33827655
Alignment:
Q  313 taagtttccatgagcatccaaaaatggttct-gagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgt 411  Q
    |||||| ||| ||||||||| || || |||| |||||| ||||||| || ||||||  ||||||| ||| || ||||||||||| ||||||| || || |    
T  33827468 taagttcccaagagcatccataagtgattcttgagaccttgctaatccacgtgcggtgctagcaagaagcgattgttgtatcctggagagtattatctat 33827567  T
Q  412 gagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataa 499  Q
    |||||||||| |||| | | ||| ||||| |||| | |||||||||||||| | || ||| | |||||||| ||||||| | ||||||    
T  33827568 gagacctatcgcatcaggtgattcatccggggtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataa 33827655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 414
Target Start/End: Complemental strand, 17895545 - 17895438
Alignment:
Q  310 aattaagtttccatgagcatccaaaaa---tggttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtacta 406  Q
    ||||||||| || ||||||||||||||   || |||||||||| || || |||||||||||   |||||| |||||||| |||||||||  |||||||||    
T  17895545 aattaagttcccttgagcatccaaaaaagttgtttctgagaccttggtagttcatgtgcggtgttagcaataagtgactcttgtatcctaaagagtacta 17895446  T
Q  407 gctgtgag 414  Q
    ||||||||    
T  17895445 gctgtgag 17895438  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 11128959 - 11128885
Alignment:
Q  387 ttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaag 461  Q
    ||||||||| |||| |||||||| ||||||| | | |||||||| ||  |||||||||| | |||||||||||||    
T  11128959 ttgtatcctggagaatactagctatgagaccaaccgcatcggatgatccatccgtggtggcaaaatactcttaag 11128885  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 461
Target Start/End: Original strand, 38787033 - 38787191
Alignment:
Q  302 caaagataaattaagtttccatgagcatccaaaaatggtt-ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgaga 400  Q
    |||| ||| |||||||||||  ||||||| |||| ||||| |||||||  || |||||||  |||||  ||||||| | |||||||||||||||| ||||    
T  38787033 caaatatatattaagtttcccagagcatctaaaagtggtttctgagactttgttaattcacatgcggtgctagcaagatgtgactgttgtatcctggaga 38787132  T
Q  401 gtactagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaag 461  Q
    |||||| || |  ||||||   |||||||||||  ||||  ||||||||||||||||||||    
T  38787133 gtactaactat--gacctactgcatcggataatcaatccagggtgacgaaatactcttaag 38787191  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 4648348 - 4648282
Alignment:
Q  351 tgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacc 417  Q
    ||||||||||||||| |   |||||| ||||||||||||||||||  |||||||||||| |||||||    
T  4648348 tgctaattcatgtgcagtgttagcaagaagtgactgttgtatcctgaagagtactagctatgagacc 4648282  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 460
Target Start/End: Original strand, 15051496 - 15051634
Alignment:
Q  323 tgagcatccaaaaatggtt-ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgaga-gtactagctgtgagacctat 420  Q
    |||||||||| || ||||| |||||||| ||||||| || ||||||  ||||||| ||| ||||||| ||| || |||| ||| ||||| ||||| ||||    
T  15051496 tgagcatccataagtggtttctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgtt-tattctggagaagtattagctatgagatctat 15051594  T
Q  421 cacatcggataatttatccgtggtgacgaaatactcttaa 460  Q
    | |||||||||| ||||||| | || ||||||||||||||    
T  15051595 cgcatcggataacttatccgggatggcgaaatactcttaa 15051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 461
Target Start/End: Original strand, 24542662 - 24542780
Alignment:
Q  343 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 442  Q
    ||||||| |||||||||| ||||||  ||||||| |  ||| |||||||| || ||||||||||||| ||||| | | | |||||||| ||  ||||||     
T  24542662 tgagaccttgctaattcacgtgcggtgctagcaagatatgattgttgtattctggagagtactagctatgagatcaaccgcatcggatgatccatccgta 24542761  T
Q  443 gtgacgaaatactcttaag 461  Q
     || | |||||||||||||    
T  24542762 atggcaaaatactcttaag 24542780  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 54572967 - 54573036
Alignment:
Q  448 gaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttc-tattctctatt 516  Q
    ||||||||||||||  | || ||| | |||||||| |||||||||||||||||||| | |||||||||||    
T  54572967 gaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 54573036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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