View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19152_low_5 (Length: 491)
Name: NF19152_low_5
Description: NF19152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19152_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 8687346 - 8686880
Alignment:
| Q |
17 |
atgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttatttta |
116 |
Q |
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| T |
8687346 |
atgcacttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaacttgaaatcataccttatttta |
8687247 |
T |
|
| Q |
117 |
tcaccccttgtttgtccatgtatatacacatgttttctctttgggtggttttacatagttatttagctagggtatattgatgtgtatgaatatatgatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8687246 |
tcaccccttgtttgtccatgtatatacacatgttttttctttgggtggttttacatagttatttagctagggtatattgatgtgtatgaatatatgatta |
8687147 |
T |
|
| Q |
217 |
acttcattattatttatgttaataaa--tacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctgaggacttc |
314 |
Q |
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| T |
8687146 |
acttcattattatttatgttaataaaaatacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctgaggacttc |
8687047 |
T |
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| Q |
315 |
tagctagccacatctcgatcgattattgtatattgctacataaaatcttcttttctatatattagaatataaagtcttcaacgagtgcagggaaaatatt |
414 |
Q |
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| T |
8687046 |
tagctagccacatctcgatcgattattgtatattgctacataaaatcttcttttctatatattagaatataaagtcttcaacgagtgcagggaaaatatt |
8686947 |
T |
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| Q |
415 |
tagtcttcaccaccttcgtgtattttgcatgaggtagtacatccaacaacattcccctcactctgtg |
481 |
Q |
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| T |
8686946 |
tagtcttcactaccttcgtgtattttgcaagaggtagcacatccaacaacattcccctcactctgtg |
8686880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 8675120 - 8675423
Alignment:
| Q |
17 |
atgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagc---ggctagaaccgtcaagaagccatgaaaaacttt-aaatcataccttat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
8675120 |
atgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaatcataacttat |
8675219 |
T |
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| Q |
113 |
tttatcaccccttgtttgtccatgtatat---acacatgttttctctttgggtggttttacatagttatttagctagggta-tattgatgtgtatgaata |
208 |
Q |
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| T |
8675220 |
tttatcaccccttgtttgtccatgtatatgatatacatgttttttcttcgggtggttttacatagttctttatctagtttaatattgatgtatatgaatg |
8675319 |
T |
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| Q |
209 |
tatgattaacttcattattatttatgttaataaatacttatgctggtttaattt--tattattgagtattttcatgcgttggttaaggttaaataatctg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||| |||||||||| ||||||||||||||||||||| |||| |
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| T |
8675320 |
tatgattaacttcattattatttatgttaataaatatttatgttggtttagttttatattatcgagtattttcgtgcgttggttaaggttaaatattctg |
8675419 |
T |
|
| Q |
307 |
agga |
310 |
Q |
| |
|
|||| |
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| T |
8675420 |
agga |
8675423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 8693351 - 8693638
Alignment:
| Q |
17 |
atgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagc---ggctagaaccgtcaagaagccatgaaaaactttaaatcataccttatt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8693351 |
atgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaacttcgaagaagccatgaaaaactttaaatcataccttatt |
8693450 |
T |
|
| Q |
114 |
ttatcaccccttgtttgtccatgtatat-acacatgttttctctttgggtggttttacatagttatttagctagggtatattgatgtgtatgaatatatg |
212 |
Q |
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| T |
8693451 |
ttgtcaccccttgtttgttcatgtatatgatacatgttttttctttgggtggttttacatcgttatttatcta----atattgatgtatttgaatgtatg |
8693546 |
T |
|
| Q |
213 |
attaacttcattattatttatgttaataaatacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctg |
306 |
Q |
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||| |||| | ||| ||||| ||||| |||||||||||| |||||||||| ||| |||||| |||||| | ||||| | ||||| |||||||| |
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| T |
8693547 |
atttacttaactataatttaatttaat-aatacttatgctagtttaattttgtta-tgagtactttcattccttggtaatggttatataatctg |
8693638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 8695913 - 8695753
Alignment:
| Q |
19 |
gcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| |||||||| |||| || |
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| T |
8695913 |
gcacttgctttgtttcaaagttatgctacaaggtatcgacaagaagcagctagaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtc |
8695818 |
T |
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| Q |
119 |
accccttgtttgtccatgtatat-acacat-gttttctctttgggtggttttacatagttattta |
181 |
Q |
| |
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|||| |||||||||||||||||| | |||| ||||| ||||||||||||||| || |||||||| |
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| T |
8695817 |
accctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgcaacgttattta |
8695753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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