View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19153_low_2 (Length: 444)
Name: NF19153_low_2
Description: NF19153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19153_low_2 |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 2800 - 3219
Alignment:
| Q |
11 |
atcatcactctctcttacgtaaagattttaaattttcttttcaatagaagttatacttcacagcttttatgttcagctgttgtacgatcctttcatcctt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800 |
atcatcactctctcttacgtaaagattttaaattttcttttcaatagaagttatacttcacagcttttatgttcagctgttgtacgatcctttcatcctt |
2899 |
T |
|
| Q |
111 |
ggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcatttttcactgcataatcctgccaacaaatgttttgaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
2900 |
ggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagcataatcctgccaacaaatgttttgaaa |
2999 |
T |
|
| Q |
211 |
tcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaa-ggagcaatatgtcatttaatttgatgactcttttggac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3000 |
tcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttggac |
3099 |
T |
|
| Q |
310 |
tgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctca |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3100 |
tgctctttgatttttcttttaactggttctcttatgtaatggtttcaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctca |
3199 |
T |
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| Q |
410 |
ttttctttagtcatcatttt |
429 |
Q |
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|||||||||||||||||||| |
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| T |
3200 |
ttttctttagtcatcatttt |
3219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 86 - 425
Target Start/End: Original strand, 19335775 - 19336115
Alignment:
| Q |
86 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcatttttcactgcat |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19335775 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccactgcat |
19335874 |
T |
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| Q |
186 |
aatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaa-ggagcaatatgtc |
284 |
Q |
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| T |
19335875 |
aatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
19335974 |
T |
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| Q |
285 |
atttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19335975 |
atttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaattttgttgagttaaataatagt |
19336074 |
T |
|
| Q |
385 |
aactttctacaatttcttatcctcattttctttagtcatca |
425 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
19336075 |
aactttctacaatttcttatcctcattttctttagtcatca |
19336115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 85 - 425
Target Start/End: Original strand, 14933 - 15274
Alignment:
| Q |
85 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcatttttcactgca |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
14933 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
15032 |
T |
|
| Q |
185 |
taatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaa-ggagcaatatgt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
15033 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
15132 |
T |
|
| Q |
284 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15133 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
15232 |
T |
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| Q |
384 |
taactttctacaatttcttatcctcattttctttagtcatca |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
15233 |
taactttctacaatttcttatcctcattttctttagtcatca |
15274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 85 - 425
Target Start/End: Complemental strand, 17939010 - 17938669
Alignment:
| Q |
85 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcatttttcactgca |
184 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
17939010 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
17938911 |
T |
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| Q |
185 |
taatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaa-ggagcaatatgt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
17938910 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
17938811 |
T |
|
| Q |
284 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938810 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
17938711 |
T |
|
| Q |
384 |
taactttctacaatttcttatcctcattttctttagtcatca |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938710 |
taactttctacaatttcttatcctcattttctttagtcatca |
17938669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 22487720 - 22487686
Alignment:
| Q |
34 |
gattttaaattttcttttcaatagaagttatactt |
68 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
22487720 |
gattttaaattttattttcaatagaagttatactt |
22487686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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