View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19153_low_3 (Length: 375)
Name: NF19153_low_3
Description: NF19153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19153_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 38706746 - 38707021
Alignment:
| Q |
25 |
ccaaaacaaaactaaaaacacgtccccagaactccaagcccaaaatcagctgaaaacagaacggcctaatatatacaatcatcataaagcagacacctag |
124 |
Q |
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| T |
38706746 |
ccaaaacaaaactaaaaacacgtccccatatctccaagcccacaatcagcagaaaacagaacggcctaataca-------atcataaagcatgcacctag |
38706838 |
T |
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| Q |
125 |
agacaaaaacacccaacttaaagactcc----aaaccttagcccaccctaagagaacccaaataatccacaacaattccctcctatcagtaaggaccaac |
220 |
Q |
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| T |
38706839 |
agacaaaaacacccaacttaaagactccgaccaaaccttagcccaccctaagggaacccaaat---ccacaacaattccctcctatcagtaaggaccaac |
38706935 |
T |
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| Q |
221 |
agccgctgagaccacaaagagatcaacccctaaaccatgatctatctaccagtattattctaatgaaaacggaactatcaagcttgt |
307 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
38706936 |
agccgctgagaccacaaagagatcaa-ccctaaaccatgatctatctaccagtattattctaatgaaaatggagctatcaagcttgt |
38707021 |
T |
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