View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19153_low_5 (Length: 258)

Name: NF19153_low_5
Description: NF19153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19153_low_5
NF19153_low_5
[»] chr2 (6 HSPs)
chr2 (34-250)||(15930552-15930770)
chr2 (46-84)||(38088778-38088816)
chr2 (1-36)||(16241382-16241417)
chr2 (1-35)||(6761464-6761498)
chr2 (1-35)||(25892059-25892093)
chr2 (1-35)||(44737397-44737431)
[»] scaffold0421 (1 HSPs)
scaffold0421 (34-250)||(4789-5007)
[»] chr5 (3 HSPs)
chr5 (1-35)||(29374169-29374203)
chr5 (1-35)||(13144879-13144913)
chr5 (1-35)||(25027693-25027727)
[»] chr8 (5 HSPs)
chr8 (1-36)||(2229185-2229220)
chr8 (1-35)||(25847966-25848000)
chr8 (1-39)||(45145864-45145902)
chr8 (1-30)||(32159149-32159178)
chr8 (1-37)||(29563655-29563691)
[»] chr3 (6 HSPs)
chr3 (1-36)||(26999019-26999054)
chr3 (1-36)||(47449914-47449949)
chr3 (1-35)||(8243797-8243831)
chr3 (1-35)||(9440243-9440277)
chr3 (1-35)||(10049667-10049701)
chr3 (1-34)||(6087016-6087049)
[»] chr7 (2 HSPs)
chr7 (1-35)||(10599431-10599465)
chr7 (1-35)||(23248783-23248817)
[»] chr6 (6 HSPs)
chr6 (1-35)||(885717-885751)
chr6 (1-35)||(17225358-17225392)
chr6 (1-35)||(22880917-22880951)
chr6 (1-35)||(22898852-22898886)
chr6 (1-35)||(31971145-31971179)
chr6 (1-38)||(390920-390957)
[»] chr4 (6 HSPs)
chr4 (1-35)||(580526-580560)
chr4 (1-35)||(4758892-4758926)
chr4 (1-35)||(18135428-18135462)
chr4 (1-35)||(36099486-36099520)
chr4 (1-35)||(49122635-49122669)
chr4 (1-35)||(53621443-53621477)
[»] chr1 (7 HSPs)
chr1 (1-35)||(2352308-2352342)
chr1 (1-35)||(14281589-14281623)
chr1 (1-35)||(24595033-24595067)
chr1 (1-35)||(38830482-38830516)
chr1 (1-30)||(2512415-2512444)
chr1 (1-29)||(23537436-23537464)
chr1 (1-37)||(29312436-29312472)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 34 - 250
Target Start/End: Complemental strand, 15930770 - 15930552
Alignment:
Q  34 tacattatagccttttaaattctttgcattttgaatttccaattatccatgcttgagctactaactacaacacatggctcaaggtcaagaacatgcatgt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  15930770 tacattatagccttttaaattctttgcattttgaatttccaattatccatgcttgagctactaactacagcacatggctcaaggtcacgagcatgcatgt 15930671  T
Q  134 tttcaaagcaaacatgcaagtatcaataaaagctccattttatatat--taaacactctattaaactttttactaacactatattaatgttagaccacta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15930670 tttcaaagcaaacatgcaagtatcaataaaagctccattttatatattataaacactctattaaactttttactaacactatattaatgttagaccactg 15930571  T
Q  232 tatctattcaagttcatct 250  Q
    |||||||||||||||||||    
T  15930570 tatctattcaagttcatct 15930552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 38088816 - 38088778
Alignment:
Q  46 ttttaaattctttgcattttgaatttccaattatccatg 84  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  38088816 ttttaaattctttgcattttgaatttcaaattatccatg 38088778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16241382 - 16241417
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtac 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16241382 taaattgtctcttgtaaataggaccggaggtagtac 16241417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6761498 - 6761464
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  6761498 taaattgtctcttgtaaataggaccggaggtagta 6761464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25892059 - 25892093
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  25892059 taaattgtctcttgtaaataggaccggaggtagta 25892093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44737397 - 44737431
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44737397 taaattgtctcttgtaaataggaccggaggtagta 44737431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 34 - 250
Target Start/End: Original strand, 4789 - 5007
Alignment:
Q  34 tacattatagccttttaaattctttgcattttgaatttccaattatccatgcttgagctactaactacaacacatggctcaaggtcaagaacatgcatgt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||    
T  4789 tacattatagccttttaaattctttgcattttgaatttccaattatccatgcttgagctactaactagagcacatggctcaaggtcacgagcatgcatgt 4888  T
Q  134 tttcaaagcaaacatgcaagtatcaataaaagctccattttatatat--taaacactctattaaactttttactaacactatattaatgttagaccacta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4889 tttcaaagcaaacatgcaagtatcaataaaagctccattttatatattataaacactctattaaactttttactaacactatattaatgttagaccactg 4988  T
Q  232 tatctattcaagttcatct 250  Q
    |||||||||||||||||||    
T  4989 tatctattcaagttcatct 5007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29374203 - 29374169
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  29374203 taaattgtctcttgtaaataggatcggaggtagta 29374169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13144913 - 13144879
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13144913 taaattgtctcttgtaaataggaccggaggtagta 13144879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25027727 - 25027693
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  25027727 taaattgtctcttgtaaataggaccggaggtagta 25027693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2229185 - 2229220
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtac 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2229185 taaattgtctcttgtaaataggaccggaggtagtac 2229220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25848000 - 25847966
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  25848000 taaattgtctcttgtaaataggatcggagctagta 25847966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45145902 - 45145864
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtacatt 39  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  45145902 taaattgtctcttgtaaataggaccggagggagtacatt 45145864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32159149 - 32159178
Alignment:
Q  1 taaattgtctcttgtaaataggatcggagg 30  Q
    ||||||||||||||||||||||||||||||    
T  32159149 taaattgtctcttgtaaataggatcggagg 32159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29563691 - 29563655
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtaca 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  29563691 taaattgtctcttgtaaataggaccggagggagtaca 29563655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26999054 - 26999019
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtac 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26999054 taaattgtctcttgtaaataggaccggaggtagtac 26999019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47449949 - 47449914
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtac 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  47449949 taaattgtctcttgtaaataggatcggagggagtac 47449914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8243797 - 8243831
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  8243797 taaattgtctcttgtaaataggaccggaggtagta 8243831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9440243 - 9440277
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  9440243 taaattgtctcttgtaaataggaccggaggtagta 9440277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10049701 - 10049667
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  10049701 taaattgtctcttgtaaataggaccggaggtagta 10049667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6087016 - 6087049
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  6087016 taaattgtctcttgtaaataggaccggaggtagt 6087049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10599431 - 10599465
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  10599431 taaattgtctcttgtaaataggatcggagggagta 10599465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23248783 - 23248817
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  23248783 taaattgtctcttgtaaataggaccggaggtagta 23248817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 885717 - 885751
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  885717 taaattctctcttgtaaataggatcggaggtagta 885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17225358 - 17225392
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  17225358 taaattgtctcttgtaaataggatcggagggagta 17225392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22880951 - 22880917
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  22880951 taaattgtctcttgtaaataggaccggaggtagta 22880917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22898886 - 22898852
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  22898886 taaattgtctcttgtaaataggaccggaggtagta 22898852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31971145 - 31971179
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31971145 taaattgtctcttgtaaataggaccggaggtagta 31971179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 390920 - 390957
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtacat 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  390920 taaattgtctcttgtaaataggaccggagggagtacat 390957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 580526 - 580560
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  580526 taaattgtctcttgtaaataggaccggaggtagta 580560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4758892 - 4758926
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4758892 taaattgtctcttgtaaataggaccggaggtagta 4758926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18135428 - 18135462
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  18135428 taaattgtctcttgtaaataggaccggaggtagta 18135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36099520 - 36099486
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36099520 taaattgtctcttgtaaataggaccggaggtagta 36099486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49122635 - 49122669
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  49122635 taaattgtctcttgtaaataggaccggaggtagta 49122669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 53621443 - 53621477
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  53621443 taaattgtctcttgtaaataggaccggaggtagta 53621477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2352342 - 2352308
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  2352342 taaattgtctcttgtaaataggaccggaggtagta 2352308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14281623 - 14281589
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  14281623 taaattgtctcttgtaaataggaccggaggtagta 14281589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24595033 - 24595067
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  24595033 taaattgtctcttgtaaataggatcagaggtagta 24595067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38830516 - 38830482
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38830516 taaattgtctcttgtaaataggaccggaggtagta 38830482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2512444 - 2512415
Alignment:
Q  1 taaattgtctcttgtaaataggatcggagg 30  Q
    ||||||||||||||||||||||||||||||    
T  2512444 taaattgtctcttgtaaataggatcggagg 2512415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23537436 - 23537464
Alignment:
Q  1 taaattgtctcttgtaaataggatcggag 29  Q
    |||||||||||||||||||||||||||||    
T  23537436 taaattgtctcttgtaaataggatcggag 23537464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29312472 - 29312436
Alignment:
Q  1 taaattgtctcttgtaaataggatcggaggtagtaca 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  29312472 taaattgtctcttgtaaataggaccggaggaagtaca 29312436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University