View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19154_low_1 (Length: 361)
Name: NF19154_low_1
Description: NF19154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19154_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 56436422 - 56436763
Alignment:
| Q |
2 |
cgtgaaatagaggggtaattcgactccgttcttccccttttctccctgcaacagcaatcaccctccattttcatctcatcgtcggaatgggtggaaaggg |
101 |
Q |
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| T |
56436422 |
cgtgaaatagaggggtaattcgactccgttcttccccttttctccctgcaacagcaatcaccctccattttcatctcatcgtcggaatgggtggaaaggg |
56436521 |
T |
|
| Q |
102 |
aataggaaataaaagtgtgttgattactggtgttagcaaaggaattggtagggctcttgctattgaattggcgaatcgaggtcacaccattataggttgt |
201 |
Q |
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| T |
56436522 |
aataggaaataaaagtgtgttgattactggtgttagcaaaggaattggtagggctcttgctattgaattggcgaatcgaggtcacaccattataggttgt |
56436621 |
T |
|
| Q |
202 |
tctcgtgctcaggataagcttgattctcttcaatctcttttacttccaaataatcataatcatctcttcctcaatgttgacgtcagctccgatgacagcg |
301 |
Q |
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| T |
56436622 |
tctcgtgctcaggataagcttgattctcttcaatctcttttacttccaaataatcataatcatctcttcctcaatgttgacgtcagctccaatgacagcg |
56436721 |
T |
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| Q |
302 |
ttcaacagatggctcgcactgttatggagatgaaggggggtc |
343 |
Q |
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| T |
56436722 |
ttcaacagatggctcgcactgttatggagatgaaggggggtc |
56436763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 24890527 - 24890441
Alignment:
| Q |
122 |
tgattactggtgttagcaaaggaattggtagggctcttgctattgaattggcgaatcgaggtcacaccattataggttgttctcgtg |
208 |
Q |
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| T |
24890527 |
tgataactggtgttagcaagggcctcggaagggctcttgcaattgaattggctaatcgcggccacaccattatcggatgttctcgtg |
24890441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 26562543 - 26562659
Alignment:
| Q |
122 |
tgattactggtgttagcaaaggaattggtagggctcttgctattgaattggcgaatcgaggtcacaccattataggttgttctcgtgctcaggataagct |
221 |
Q |
| |
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|||| ||||||||||||||||| | || ||||||||||| ||||||||||| ||| | ||||||||||| || ||||| ||| ||| |||||||| |
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| T |
26562543 |
tgataactggtgttagcaaaggcctcggaagggctcttgcaattgaattggcttatcacgaccacaccattattggatgttcaggtgatcaagataagct |
26562642 |
T |
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| Q |
222 |
tgattctcttcaatctc |
238 |
Q |
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|| | |||||||||| |
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| T |
26562643 |
cgacttccttcaatctc |
26562659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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