View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19154_low_2 (Length: 361)
Name: NF19154_low_2
Description: NF19154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19154_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 2171005 - 2171340
Alignment:
| Q |
11 |
cagagactacgagtatgtgtttaaaattgtgtcttagttaggtgctatgtttcttttatgtaataatagtagtataacgaacttttatatctaatcgaat |
110 |
Q |
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| T |
2171005 |
cagaaactacgagtatgtgtttaaaattgtgtcttagttaggtgctatgtttcttttatgtaataatagtagtataacgaacttttatatctaatcgaat |
2171104 |
T |
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| Q |
111 |
tataatgtacctgaactaagaacattgatcttggagggattttcatgtagtgtccaagcttgaaatcactaaggaaggagactgcttgtgccatgctaat |
210 |
Q |
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| T |
2171105 |
tataatgtacctgaactaagaacattgatcttggagggattttcatgtagtgtccaagcttgaaatcactaaggaaggagactgcttgtgccatgctaat |
2171204 |
T |
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| Q |
211 |
gtaaccataggttttgaagcatacatttgctattggtcttccagggtaaatcaaaccaaagacatactcggtgataatattcaatcctggtgtctgtaga |
310 |
Q |
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| T |
2171205 |
gtaaccataggttttgaagcatacatttgctattggtcttccagggtaaatcaaaccaaagacatactcggtgataatattcaatcctggtgtctgtaga |
2171304 |
T |
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| Q |
311 |
gggaaaaaacttgaattcaaatgtacatgtatatat |
346 |
Q |
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| T |
2171305 |
gggaaaaaacttgaattcaaatgtacatgtatatat |
2171340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 118 - 308
Target Start/End: Complemental strand, 36902760 - 36902570
Alignment:
| Q |
118 |
tacctgaactaagaacattgatcttggagggattttcatgtagtgtccaagcttgaaatcactaaggaaggagactgcttgtgccatgctaatgtaacca |
217 |
Q |
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| T |
36902760 |
tacctgcactaagaacattgatcttggagggattttcatgtagtgtccaagcttgaaatcgctgaggaatgagacagcctgagccatgcttatgtaacca |
36902661 |
T |
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| Q |
218 |
taggttttgaagcatacatttgctattggtcttccagggtaaatcaaaccaaagacatactcggtgataatattcaatcctggtgtctgta |
308 |
Q |
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| T |
36902660 |
taggttttgaagcatacatttgctattggtcttccagggtaaatgataccgaagatatactcagtgatgatattcaaccccggtgtctgta |
36902570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 52034471 - 52034411
Alignment:
| Q |
118 |
tacctgaactaagaacattgatcttggagggattttcatgtagtgtccaagcttgaaatca |
178 |
Q |
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| T |
52034471 |
tacctgaactatgaacattgaccttggtgggatcttcatgtaatgtcctaacttgaaatca |
52034411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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