View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19154_low_3 (Length: 340)
Name: NF19154_low_3
Description: NF19154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19154_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 50638618 - 50638295
Alignment:
| Q |
1 |
aataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaactttgagcctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50638618 |
aataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaactttgagcctcct |
50638519 |
T |
|
| Q |
101 |
gcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattccatatgggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50638518 |
gcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattccatatgggtgc |
50638419 |
T |
|
| Q |
201 |
aatattggtggttaagaatttgaagaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggagaaattgctccgagaatcgcgag |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50638418 |
aatattggtggttaagaatttgatgaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggagaaattgctccgagaatcgcgag |
50638319 |
T |
|
| Q |
301 |
tgcgtatatgaaggaggaatgatt |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
50638318 |
tgcgtatatgaaggaggaatgatt |
50638295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 16798051 - 16797728
Alignment:
| Q |
1 |
aataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaactttgagcctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16798051 |
aataaatgtaaggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaactttgagcctcct |
16797952 |
T |
|
| Q |
101 |
gcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattccatatgggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797951 |
gcaaactgaataaataaaacactcccaagtgtccatgaaactagtatgacctgattggatagttgtgatagtctagaaccagtcaattccatatgggtgc |
16797852 |
T |
|
| Q |
201 |
aatattggtggttaagaatttgaagaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggagaaattgctccgagaatcgcgag |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
16797851 |
aatattggtggttaagaatttgatgaattagtaatttgatgttggaggtgattgaatcgcgaattcagacgagaggagaaattgcttcgagaatcgcaag |
16797752 |
T |
|
| Q |
301 |
tgcgtatatgaaggaggaatgatt |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16797751 |
tgcgtatatgaaggaggaatgatt |
16797728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 29808014 - 29808220
Alignment:
| Q |
12 |
ggaacaagatgttaatgcttttgaaataaatcctccaatggtggtaattaaaggaatactgacgtagaggttaaaactttgagcctcctgcaaactgaat |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
29808014 |
ggaacaggatgttaatgcttttgaaataaatcctccaatggtga-aattaaaggaatacttgcatggaggttcaaactttgagcctcctgcaaactgaat |
29808112 |
T |
|
| Q |
112 |
aaataaaacactcccaagtgtc---catgaaactag--tatgacctgattggatagttgtgatagtctagaacca----gtcaattccatatgggtgcaa |
202 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||| ||||| |||||| ||||||||||||| |||||||||| |||||||||||| | |||||| |
|
|
| T |
29808113 |
aaataaaacact-cctagtgtccctcatgaaactagtctatgaactgattagatagttgtgatactctagaaccagtcggtcaattccatacgagtgcaa |
29808211 |
T |
|
| Q |
203 |
tattggtgg |
211 |
Q |
| |
|
|| |||||| |
|
|
| T |
29808212 |
tagtggtgg |
29808220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University