View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19154_low_4 (Length: 322)
Name: NF19154_low_4
Description: NF19154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19154_low_4 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 48 - 322
Target Start/End: Complemental strand, 24931538 - 24931264
Alignment:
| Q |
48 |
ttgaatccaaaatcttgttannnnnnnatctaaccatgttataggtatgaaatattcgtcgtagtttaacaatgaatggtctctattgaaaaacatgttg |
147 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||||| ||| |
|
|
| T |
24931538 |
ttgaatccaaaatcttgttattttttaatctaaccatgttataggtatgaaatattcgccgtagtttaacgatgaattgactctattgaaaaacatattg |
24931439 |
T |
|
| Q |
148 |
aacacaaaatgttagttctaccttgtcaaccgagttttctccacaaggttaaatcaaggtccgtaacttcatttttatcctagtacgaaagctgagaact |
247 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24931438 |
aacacaaaatgttagttctcccttctcaatcgaattttctccataaggttaaatcaagttccgtaacttcatttttatcctagtacgaaagctgagaact |
24931339 |
T |
|
| Q |
248 |
ctatgaaatacttaagtcaacacacctttttattttagatttaaacacaacaatatataaaaattaaccaacaat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24931338 |
ctatgaaatacttaagtcaacacacctttttattttagatttaaacacaacaatatataaaaattaatcaacaat |
24931264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 24931567 - 24931534
Alignment:
| Q |
1 |
gggatagagatgcatttgagagaaattgattgaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
24931567 |
gggatagagatgcatttgagagaaattgattgaa |
24931534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University