View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19154_low_5 (Length: 247)
Name: NF19154_low_5
Description: NF19154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19154_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 27402259 - 27402464
Alignment:
| Q |
1 |
tacaaaattctaaattaaaactcctatttttctcataaaaaattgtgtccatgagtgtttggttacattgttttcagtttta--atttctcatcagaatt |
98 |
Q |
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| T |
27402259 |
tacaaaattctaaattaaaactcctatttttctcataattttttttgtccatgagtgtttggttacattgttttcagtttaagaatttctcatcagaatt |
27402358 |
T |
|
| Q |
99 |
tgttaccatgattgtttggttacattgttttacgtttaaggttaaggttaagcctgcaaggatacacatttctacttagcttacttgttgctctattctt |
198 |
Q |
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| T |
27402359 |
tgttaccatgattgtttggttactttgtttcccgt------ttaaggttaagcctgcaaggatacacatttctacttagcttacttgttgctctattctt |
27402452 |
T |
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| Q |
199 |
tcatgttatttc |
210 |
Q |
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|||||||||||| |
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| T |
27402453 |
tcatgttatttc |
27402464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 19688571 - 19688521
Alignment:
| Q |
147 |
taagcctgcaaggatacacatttctacttagcttacttgttgctctattct |
197 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19688571 |
taagccttcaagggtacacatttctacttagcttacttgttgctctattct |
19688521 |
T |
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