View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19156_low_1 (Length: 560)
Name: NF19156_low_1
Description: NF19156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19156_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Original strand, 10121045 - 10121572
Alignment:
| Q |
13 |
aatatctattcaattgtagtattatgtgannnnnnnnaatcagtttttatttggattggtttggactggaacaacgtaatatttttgtaaacattttcca |
112 |
Q |
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| T |
10121045 |
aatatctattcaattgtagtgttatgtgattttttt-aatcaatttttatttggattggtttggattggaacaacgtaatatttttgtaaacattttcca |
10121143 |
T |
|
| Q |
113 |
tcaaaaaatgtatcttgtataaactgagataataattaagttcaaccctctttcnnnnnnnnntaagttcaacccaaaatgaattaattaaattttggta |
212 |
Q |
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| T |
10121144 |
tcaaaaaatttatcttgtatgaattgagataataattaagttcaaccctctttcaaaaaaaaaaaaaattaagttcaactgaatgaattaaatttcggta |
10121243 |
T |
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| Q |
213 |
gaagtaaattatttgtactcatatatatttgttgtatgcaaccgtacctctttttcgcggatgatgtcattctttttgctaaagccattattcgagcaag |
312 |
Q |
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| T |
10121244 |
gaagtaaattatttgtacttatatatatttgttgtctgcacccgtacctctttttcgcggatgatgtcattctttttgctaaagctattattcgagcaag |
10121343 |
T |
|
| Q |
313 |
gcttattactcatgtataggcatggtaataagacggcgtggagacgagttttaccttccctgtctcatctccaagagagtgtccgtaattataataactg |
412 |
Q |
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||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10121344 |
gcttattactcatatataggcatggcaatgagacggcgtggagacgagttttaccttcactgtcccatctccaagagagtgtccgtaattataataactg |
10121443 |
T |
|
| Q |
413 |
agaaactttccatagaaaagattagacgttagcaggaatttgcaccttccaaatccaattccaagagatattatatgtctgcttataacctttcttctac |
512 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10121444 |
agaaactttccatagaaaagattagacgttagcgagaatttgcaccttccaaatccaattccaagagatattatatgcctgcttataacctttcttctac |
10121543 |
T |
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| Q |
513 |
gagctcttccgttacaaactaacttatca |
541 |
Q |
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| T |
10121544 |
gagctcttctgttacaaactaacttatca |
10121572 |
T |
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