View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19156_low_2 (Length: 429)
Name: NF19156_low_2
Description: NF19156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19156_low_2 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 17485 - 17172
Alignment:
| Q |
16 |
atgggactcaccatctcaatagtgcaagaaatcacatatctatagattattcagatcatgtaaacatattcaagatcaatattactgcacctcaagagag |
115 |
Q |
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| T |
17485 |
atgggactcaccatctcaatagtgcaagaaatcacatatctatagattattcagatcatgtaaacatattcaagatcaatatcactgcacctcaagagag |
17386 |
T |
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| Q |
116 |
cccaaacacagatggaattgatattggacactcaagctacgttttaattcaggactcaactattgcaacaggtaagagatttagatacaaataatattta |
215 |
Q |
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| T |
17385 |
cccaaacacagatggaattgatattggtcactcaagctacgttttaattcaggactcaactattgcaacaggtaagagatttagatacaaataatattta |
17286 |
T |
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| Q |
216 |
gatcggcttcacaagtgggtggtgagagattgattttccatattagtcgttcttgaatcgaataccgaatttttgaaaggtttttgttagatactcaatt |
315 |
Q |
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| T |
17285 |
gatgggcttcacaagtgggtggtgagagattgattttcaatattagtcgttcttgaatcgaatactgagtttttgaaagatttttgttagatactcaatt |
17186 |
T |
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| Q |
316 |
ttagagataattat |
329 |
Q |
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|||||||||||||| |
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| T |
17185 |
ttagagataattat |
17172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 17121 - 17066
Alignment:
| Q |
352 |
tgttaactcttcagttttcaagggaattaaaataatcgaagtttggtcgaaagaca |
407 |
Q |
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| T |
17121 |
tgttaactctttagttttcaagggaattaaaataatcgaagtttggtcgaaagaca |
17066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 12502992 - 12503305
Alignment:
| Q |
16 |
atgggactcaccatctcaatagtgcaagaaatcacatatctatagattattcagatcatgtaaacatattcaagatcaatattactgcacctcaagagag |
115 |
Q |
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| T |
12502992 |
atgggactcaccatctcaatagtgcaagaaatcacatatctatagattattcagatcatgtaaacatattcaagatcaatatcactgcacctcaagagag |
12503091 |
T |
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| Q |
116 |
cccaaacacagatggaattgatattggacactcaagctacgttttaattcaggactcaactattgcaacaggtaagagatttagatacaaataatattta |
215 |
Q |
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| T |
12503092 |
cccaaacacagatggaattgatattggtcactcaagctacgttttaattcaggactcaactattgcaacaggtaagagatttagatacaaataatattta |
12503191 |
T |
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| Q |
216 |
gatcggcttcacaagtgggtggtgagagattgattttccatattagtcgttcttgaatcgaataccgaatttttgaaaggtttttgttagatactcaatt |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
12503192 |
gatgggcttcacaagtgggtggtgagagattgattttcaatattagtcgttcttgaatcgaatactgagtttttgaaagatttttgttagatactcaatt |
12503291 |
T |
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| Q |
316 |
ttagagataattat |
329 |
Q |
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|||||||||||||| |
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| T |
12503292 |
ttagagataattat |
12503305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 407
Target Start/End: Original strand, 12503356 - 12503411
Alignment:
| Q |
352 |
tgttaactcttcagttttcaagggaattaaaataatcgaagtttggtcgaaagaca |
407 |
Q |
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| T |
12503356 |
tgttaactctttagttttcaagggaattaaaataatcgaagtttggtcgaaagaca |
12503411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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