View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19156_low_3 (Length: 421)

Name: NF19156_low_3
Description: NF19156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19156_low_3
NF19156_low_3
[»] chr4 (14 HSPs)
chr4 (16-414)||(41074806-41075209)
chr4 (238-331)||(14320962-14321055)
chr4 (238-331)||(14322132-14322225)
chr4 (238-324)||(14321708-14321794)
chr4 (238-324)||(14320540-14320626)
chr4 (186-236)||(46020667-46020717)
chr4 (193-236)||(46015435-46015478)
chr4 (186-228)||(46021346-46021388)
chr4 (191-229)||(46304201-46304239)
chr4 (191-236)||(46246221-46246266)
chr4 (186-227)||(46303770-46303811)
chr4 (192-236)||(46015982-46016026)
chr4 (233-293)||(46027955-46028014)
chr4 (233-293)||(46428272-46428332)
[»] scaffold0079 (5 HSPs)
scaffold0079 (18-168)||(6467-6625)
scaffold0079 (291-411)||(7027-7147)
scaffold0079 (186-233)||(6706-6753)
scaffold0079 (267-319)||(7857-7909)
scaffold0079 (233-275)||(6767-6809)
[»] scaffold0384 (5 HSPs)
scaffold0384 (18-168)||(3905-4064)
scaffold0384 (233-331)||(5609-5708)
scaffold0384 (291-411)||(4509-4629)
scaffold0384 (186-233)||(4145-4192)
scaffold0384 (233-275)||(4206-4248)
[»] chr1 (9 HSPs)
chr1 (186-398)||(50668398-50668626)
chr1 (233-361)||(50667974-50668102)
chr1 (189-238)||(3802615-3802664)
chr1 (238-296)||(3801754-3801812)
chr1 (233-307)||(50667366-50667440)
chr1 (188-229)||(3804059-3804100)
chr1 (186-231)||(50668119-50668164)
chr1 (186-238)||(3802173-3802225)
chr1 (186-230)||(50669344-50669388)
[»] chr5 (1 HSPs)
chr5 (298-393)||(8185984-8186079)
[»] chr8 (3 HSPs)
chr8 (190-221)||(4525277-4525308)
chr8 (190-236)||(4522904-4522950)
chr8 (239-277)||(39328272-39328310)
[»] chr7 (1 HSPs)
chr7 (298-393)||(715259-715350)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 41075209 - 41074806
Alignment:
Q  16 tcagcaacttcttctatttcatcttttgaatggggcttcgtcgctacctctgtttatttaatgttttt-tcaaataagaaacccaaaggtgagaggatat 114  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||  |||||    
T  41075209 tcagcaacttcttctattttgtcttttgaatggggcttcgtcgctacctctttttatttaatgttttgatcaaataagaaacccaaaggtgag--gatat 41075112  T
Q  115 ttcaatatggctgaaagtt------gaaaaggacaaggcaaaaacataatagaagacaaatataacagccnnnnnnnccaacttatgtgcatattaacac 208  Q
    |||||||||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  41075111 ttcaatatggctgaaagttaaaaaagaaaaagacaaggcaaaaacataatagaagacaaatataacagccaaaaaaatcaacttatgtgcatattaacac 41075012  T
Q  209 tcaatcaagagctagcattttcacaaaataattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattca 308  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  41075011 tcaatcaagagctagcattttcacaaaataattgcatcttcccatggttttaccgtcaaaatctaaatcataacaaatggacgagatgcaaattaattca 41074912  T
Q  309 accgcaaagaatatattaatacagtgttgagtaaaacttactttctacttcttgcatctcatcaagaaacgggttggttgtcacatgagaattttcccct 408  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41074911 accacaaagaatatattaatacagtgttgagtaaaacttactttctacttcttgcatctcatcaagaaacgggttggttgtcacatgagaattttcctct 41074812  T
Q  409 atgcta 414  Q
    ||||||    
T  41074811 atgcta 41074806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 14321055 - 14320962
Alignment:
Q  238 aattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaatatattaataca 331  Q
    |||||||||||| |||||||||   |||||||||||||||| |||||||||| ||| |||||||||||||||| | |||||| |||||||||||    
T  14321055 aattgtatcttcacatggttcttatgtcaaaatctaaatcacaacaaatggatgaagtgtaaattaattcaactgtaaagaacatattaataca 14320962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 14322225 - 14322132
Alignment:
Q  238 aattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaatatattaataca 331  Q
    |||||||||||| |||||||||   |||||||||||||||| |||||||||| ||| || ||||||||||||| | |||||| |||||||||||    
T  14322225 aattgtatcttcacatggttcttatgtcaaaatctaaatcacaacaaatggatgaagtgcaaattaattcaactgtaaagaacatattaataca 14322132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 14321794 - 14321708
Alignment:
Q  238 aattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaatatat 324  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||||||| ||| || | |||||||||||  ||||||| ||||    
T  14321794 aattgtatcttcccatggttctacagttaatatctaaatcatgacaaatggatgaagtgcagattaattcaactccaaagaacatat 14321708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 14320626 - 14320540
Alignment:
Q  238 aattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaatatat 324  Q
    |||||||||||| ||||||||||| || || ||||||||||| ||||||||| ||| || | |||||||||||  ||||||| ||||    
T  14320626 aattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagtgcagattaattcaactccaaagaacatat 14320540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 46020717 - 46020667
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttcacaaaa 236  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||| ||||    
T  46020717 ccaaattatgtgcatattaacactcaatcaagaggttgcattttcataaaa 46020667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 46015478 - 46015435
Alignment:
Q  193 atgtgcatattaacactcaatcaagagctagcattttcacaaaa 236  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||    
T  46015478 atgtgcatattaacactcaatcaagaggttgcattttcataaaa 46015435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 46021388 - 46021346
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattt 228  Q
    |||||||||||||||||||||| ||||||||||| | ||||||    
T  46021388 ccaacttatgtgcatattaacattcaatcaagaggttgcattt 46021346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 46304201 - 46304239
Alignment:
Q  191 ttatgtgcatattaacactcaatcaagagctagcatttt 229  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  46304201 ttatgtgcatattaacactcaaacaagagcttgcatttt 46304239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 46246221 - 46246266
Alignment:
Q  191 ttatgtgcatattaacactcaatcaagagctagcattttcacaaaa 236  Q
    ||||||||||||||||| ||||||||||| | ||||||||| ||||    
T  46246221 ttatgtgcatattaacattcaatcaagaggttgcattttcataaaa 46246266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 46303770 - 46303811
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcatt 227  Q
    |||||||||||||||||||||||  ||||||||||| |||||    
T  46303770 ccaacttatgtgcatattaacacaaaatcaagagcttgcatt 46303811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 46016026 - 46015982
Alignment:
Q  192 tatgtgcatattaacactcaatcaagagctagcattttcacaaaa 236  Q
    |||||| |||||||||||||||||||| || ||||||||| ||||    
T  46016026 tatgtgtatattaacactcaatcaagaacttgcattttcataaaa 46015982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 46028014 - 46027955
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaa 293  Q
    ||||||||||||||||| ||| ||| ||  |||||||| |||||||||||| |||||||||    
T  46028014 aaaataattgtatcttcacatagtt-taaagtcaaaatttaaatcataacagatggacgaa 46027955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 46428332 - 46428272
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaa 293  Q
    ||||||||||||||||| ||| ||| ||  |||||||| ||||||||||||  ||||||||    
T  46428332 aaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaa 46428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 6467 - 6625
Alignment:
Q  18 agcaacttcttctatttcatcttttgaatggggcttcgtcgctacctctgtttatttaatgtttt-ttcaaataagaaacccaaaggtga--gaggatat 114  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||| |||||  ||||||||    
T  6467 agcaacttcttctatttcgtcttttgaatggggcttcgtagctacctctgtttatttattgttttgatcaaataagaaacccaagggtgagggaggatat 6566  T
Q  115 ttcaatatggctgaaagtt-----gaaaaggacaaggcaaaaacataatagaagacaaa 168  Q
    || ||||||||||||||||     ||||| |||||||||||||||||| | ||||||||    
T  6567 ttaaatatggctgaaagttaaaaagaaaaagacaaggcaaaaacataaaaaaagacaaa 6625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 411
Target Start/End: Original strand, 7027 - 7147
Alignment:
Q  291 gaaatgtaaattaattcaaccgcaaagaatatattaatacagtgttgagtaaaacttactttctacttcttgcatctcatcaagaaacgggttggttgtc 390  Q
    |||||| |||||||||||||||||||||| |||||||||||    ||||||||||||||| ||| ||||||| |||||   ||||| ||||||| |||||    
T  7027 gaaatgcaaattaattcaaccgcaaagaacatattaatacaagactgagtaaaacttactctctgcttcttgtatctcgggaagaatcgggttgattgtc 7126  T
Q  391 acatgagaattttcccctatg 411  Q
    ||| |||  |||||| |||||    
T  7127 acacgaggcttttcctctatg 7147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 6706 - 6753
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttcaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6706 ccaacttatgtgcatattaacactcaatcaagagctagcattttcaca 6753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 7857 - 7909
Alignment:
Q  267 aaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaa 319  Q
    ||||||||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  7857 aaatctaaatcataatagatggatgaaatgcaaattaattcaaccgcaaagaa 7909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 6767 - 6809
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaa 275  Q
    |||| |||||||| |||||||||||||||||||||||| ||||    
T  6767 aaaagaattgtattttcccatggttctaccgtcaaaatttaaa 6809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 3905 - 4064
Alignment:
Q  18 agcaacttcttctatttcatcttttgaatggggcttcgtcgctacctctgtttatttaatgtttt-ttcaaataagaaacccaaaggtga--gaggatat 114  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||  ||||||||||||||||| |||||  ||||||||    
T  3905 agcaacttcttctatttcgtcttttgaacggggcttcgtagctacctctgtttatttattgttttgatcaaataagaaacccaagggtgagggaggatat 4004  T
Q  115 ttcaatatggctgaaagtt------gaaaaggacaaggcaaaaacataatagaagacaaa 168  Q
    || ||||||||||||||||      ||||| |||||||||||||||||| | ||||||||    
T  4005 ttaaatatggctgaaagttaaaaaagaaaaagacaaggcaaaaacataaaaaaagacaaa 4064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 5609 - 5708
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaag-aatatattaataca 331  Q
    |||| |||||||||||||||||||||||| || |||||||||||||||| | ||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  5609 aaaagaattgtatcttcccatggttctacggtaaaaatctaaatcataatagatggatgaaatgcaaattaattcaaccgcaaagaaatatattaataca 5708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 411
Target Start/End: Original strand, 4509 - 4629
Alignment:
Q  291 gaaatgtaaattaattcaaccgcaaagaatatattaatacagtgttgagtaaaacttactttctacttcttgcatctcatcaagaaacgggttggttgtc 390  Q
    |||||| |||||||||||||||||||||| |||||||||||    ||||||||||||||||||| ||||||| |||||   ||||| ||||||| |||||    
T  4509 gaaatgcaaattaattcaaccgcaaagaacatattaatacaagactgagtaaaacttactttctgcttcttgtatctcgagaagaatcgggttgattgtc 4608  T
Q  391 acatgagaattttcccctatg 411  Q
    ||| |||  |||||| |||||    
T  4609 acacgaggcttttcctctatg 4629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 4145 - 4192
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttcaca 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4145 ccaacttatgtgcatattaacactcaatctagagctagcattttcaca 4192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 4206 - 4248
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaa 275  Q
    |||| |||||||| |||||||||||||||||||||||| ||||    
T  4206 aaaagaattgtattttcccatggttctaccgtcaaaatttaaa 4248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 398
Target Start/End: Complemental strand, 50668626 - 50668398
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttcacaaa--------------ataattgtatcttcccatggttctaccgtcaaaatc 271  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| |||              | |||| ||| ||| |||| |||||  |||||||||    
T  50668626 ccaacttatgtgcatattaacactcgatcaagagcttgcattttcataaagcagtaaagcaaaaagaattctattttcacatgcttctaaagtcaaaatc 50668527  T
Q  272 taaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaatatattaataca--gtgttgagtaaaacttactttctacttcttgcatctca 369  Q
    |||||||| ||||||||| ||| || | ||||||||||| |||||||| |||||||||||   |   ||||||||||||||||||||||||||  |||||    
T  50668526 taaatcatgacaaatggatgaagtgcagattaattcaactgcaaagaacatattaatacaacatcaagagtaaaacttactttctacttcttgtttctca 50668427  T
Q  370 tcaagaaacgggttggttgtcacatgaga 398  Q
     ||| |||||| ||||| |||||| ||||    
T  50668426 gcaacaaacggtttggtcgtcacaagaga 50668398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 361
Target Start/End: Complemental strand, 50668102 - 50667974
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattcaaccgcaaagaatatattaatacag 332  Q
    |||| |||||||||||| ||||||||||  |||||||| |||||||| ||| ||||||||| || ||| ||||||||| |||||||| |||| | ||||     
T  50668102 aaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatatggacgaagtgcaaactaattcaactgcaaagaacatatgattacaa 50668003  T
Q  333 tgttgagtaaaacttactttctacttctt 361  Q
      | |||| ||||||||||||||||||||    
T  50668002 catcgagtgaaacttactttctacttctt 50667974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3802615 - 3802664
Alignment:
Q  189 acttatgtgcatattaacactcaatcaagagctagcattttcacaaaata 238  Q
    ||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  3802615 acttatgtgcatattaacactcaatcaagaggttgcattttcataaaata 3802664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3801754 - 3801812
Alignment:
Q  238 aattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatg 296  Q
    |||||| ||||| ||||||| ||  ||||||||||||||||||||| ||||| ||||||    
T  3801754 aattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatg 3801812  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 50667440 - 50667366
Alignment:
Q  233 aaaataattgtatcttcccatggttctaccgtcaaaatctaaatcataacaaatggacgaaatgtaaattaattc 307  Q
    |||| ||||| |||||  ||||||||||  ||||||||||||||||| ||||| ||| ||| || ||||||||||    
T  50667440 aaaagaattgcatcttgacatggttctaaagtcaaaatctaaatcatgacaaaaggatgaagtgaaaattaattc 50667366  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 3804059 - 3804100
Alignment:
Q  188 aacttatgtgcatattaacactcaatcaagagctagcatttt 229  Q
    ||||||||  |||||||||||||||||||||||| |||||||    
T  3804059 aacttatgcacatattaacactcaatcaagagcttgcatttt 3804100  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 50668164 - 50668119
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttca 231  Q
    |||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  50668164 ccaacttacgtgcatattaacattcaattaagagcttgcattttca 50668119  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 3802173 - 3802225
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttcacaaaata 238  Q
    ||||| ||||||||||||||||||||| |||||| | | ||||||| ||||||    
T  3802173 ccaacctatgtgcatattaacactcaaacaagaggttgtattttcataaaata 3802225  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 50669388 - 50669344
Alignment:
Q  186 ccaacttatgtgcatattaacactcaatcaagagctagcattttc 230  Q
    ||||||||||||| |||||||||| |||||  |||||||||||||    
T  50669388 ccaacttatgtgcgtattaacactgaatcagtagctagcattttc 50669344  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 393
Target Start/End: Complemental strand, 8186079 - 8185984
Alignment:
Q  298 aaattaattcaaccgcaaagaatatattaatacagtgttgagtaaaacttactttctacttcttgcatctcatcaagaaacgggttggttgtcaca 393  Q
    ||||||||||||| |||||||| |||||||||||   |||||||||||||||||||||| |||||| ||||  ||| |||| ||||||| ||||||    
T  8186079 aaattaattcaactgcaaagaacatattaatacaacattgagtaaaacttactttctacatcttgcttctcggcaaaaaacaggttggtcgtcaca 8185984  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 221
Target Start/End: Original strand, 4525277 - 4525308
Alignment:
Q  190 cttatgtgcatattaacactcaatcaagagct 221  Q
    ||||||||||||||||||||||||||||||||    
T  4525277 cttatgtgcatattaacactcaatcaagagct 4525308  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 4522904 - 4522950
Alignment:
Q  190 cttatgtgcatattaacactcaatcaagagctagcattttcacaaaa 236  Q
    ||||||||||| |||||||||||||||||||| | ||||||| ||||    
T  4522904 cttatgtgcattttaacactcaatcaagagcttgaattttcataaaa 4522950  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 39328310 - 39328272
Alignment:
Q  239 attgtatcttcccatggttctaccgtcaaaatctaaatc 277  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  39328310 attgtatcttcacatggttctacagtcaaaatctaaatc 39328272  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 393
Target Start/End: Complemental strand, 715350 - 715259
Alignment:
Q  298 aaattaattcaaccgcaaagaatatattaatacagtgttgagtaaaacttactttctacttcttgcatctcatcaagaaacgggttggttgtcaca 393  Q
    |||||||||||||| ||||||| |||||||||||   |||||||||    |||||||||||||||| ||| |  ||||||||| | | ||||||||    
T  715350 aaattaattcaaccacaaagaacatattaatacaacattgagtaaa----actttctacttcttgcttctaagaaagaaacggttcgcttgtcaca 715259  T

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