View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19156_low_5 (Length: 338)
Name: NF19156_low_5
Description: NF19156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19156_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 45020019 - 45020225
Alignment:
| Q |
115 |
cctacttcaaacaacgcttaagaagtaggagtaagaaatggtgccatagttgtacccnnnnnnnnnnnnnnnnnnnnnnnnnggtgccatattttttgtc |
214 |
Q |
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| T |
45020019 |
cctacttcaaacaacgcttaagaagtaggagtaagaaatggtgccatagttgtacccaaaacaaataaaaataaaaataaatggtgccatattttttgtc |
45020118 |
T |
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| Q |
215 |
tctttgacaaacgggaggttaaaattgaaacgaatggttacttgaacaaatttgagacaaatttatgatatgttattaaaattgaaacgaatggttagtt |
314 |
Q |
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| T |
45020119 |
tctttgacaaacgggaggttaaaattgaaacgaatggttacttgaacaaatttgagacaaatttatgatatgtgattaaaattgaaacgaatggttagtt |
45020218 |
T |
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| Q |
315 |
caaccac |
321 |
Q |
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|||||| |
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| T |
45020219 |
gaaccac |
45020225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 45019917 - 45019964
Alignment:
| Q |
13 |
aatatcgttttaccataaaaattcattagtatattcagtcatttccct |
60 |
Q |
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| T |
45019917 |
aatatcgttttaccataaaaattcattagtatattcagtcatttccct |
45019964 |
T |
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